Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / timjmiller/wham issues and pull requests

#83 - minor bug in par_table_fn.R function

Issue - State: closed - Opened by JDeroba 12 months ago - 1 comment

#82 - Allow WAA inputs for projections

Pull Request - State: closed - Opened by CPerretti about 1 year ago

#81 - Allow WAA inputs for projections

Pull Request - State: closed - Opened by CPerretti about 1 year ago

#80 - Issue when simulating paa and age-specific selectivity == 0

Issue - State: closed - Opened by GiancarloMCorrea over 1 year ago - 5 comments

#79 - edit README

Pull Request - State: closed - Opened by ricardd over 1 year ago - 1 comment

#78 - Growth

Pull Request - State: closed - Opened by GiancarloMCorrea over 1 year ago

#77 - Linear-DM with additional documentation

Pull Request - State: closed - Opened by James-Thorson over 1 year ago - 1 comment

#76 - Issue when calculating nll for compositional data

Issue - State: closed - Opened by GiancarloMCorrea over 1 year ago - 1 comment

#75 - First stab at adding linear-DM

Pull Request - State: closed - Opened by James-Thorson-NOAA over 1 year ago

#74 - Growth

Pull Request - State: closed - Opened by GiancarloMCorrea over 1 year ago - 2 comments

#73 - Incorrect indexing for CAA simulation?

Issue - State: closed - Opened by ahart1 over 1 year ago - 1 comment

#72 - Bug when running retros

Issue - State: closed - Opened by GiancarloMCorrea over 1 year ago - 1 comment

#71 - Inputting new parameters (par = ) into simulate() function

Issue - State: open - Opened by emilylil almost 2 years ago - 1 comment

#70 - data$n_fleets in set_catch is hard wired to 1 fleet

Issue - State: closed - Opened by chengmatt about 2 years ago - 2 comments

#69 - Project_wham doesn't work when only 1 WAA matrix in data due to indexing error

Issue - State: open - Opened by ahart1 about 2 years ago - 1 comment

#68 - FXSPR_Static

Issue - State: closed - Opened by kcurti about 2 years ago - 1 comment

#67 - paa and do_osa

Issue - State: closed - Opened by GiancarloMCorrea about 2 years ago - 1 comment

#66 - Adding multivariate-Tweedie likelihood

Pull Request - State: closed - Opened by James-Thorson-NOAA over 2 years ago - 3 comments

#65 - multivariate-Tweedie likelihood

Issue - State: closed - Opened by James-Thorson-NOAA over 2 years ago - 9 comments

#64 - Error index age comps

Issue - State: closed - Opened by GiancarloMCorrea over 2 years ago - 1 comment

#63 - Question About WHAM and ASAP

Issue - State: closed - Opened by GNelson12 over 2 years ago - 2 comments

#62 - Request ADREPORT for logit_q_mat

Issue - State: closed - Opened by Cole-Monnahan-NOAA over 2 years ago - 5 comments

#61 - selectivity re="ar1" with model = "age-specific" options to prepare_wham_input function

Issue - State: open - Opened by timjmiller over 2 years ago - 11 comments
Labels: bug

#59 - allow same selectivity blocks for different fleets/indices

Issue - State: open - Opened by timjmiller over 2 years ago - 1 comment

#58 - Expanding the Dirichlet Multinomial Library

Issue - State: closed - Opened by emilylil over 2 years ago - 5 comments

#57 - Advice on Ecov for catchability options

Issue - State: closed - Opened by Cole-Monnahan-NOAA over 2 years ago - 6 comments

#56 - Small bug when selex of oldest age = 0 and N1_model = 1 is used

Issue - State: closed - Opened by GiancarloMCorrea over 2 years ago - 2 comments

#55 - Small bug in N1_model=1 on R side

Issue - State: closed - Opened by Cole-Monnahan-NOAA over 2 years ago - 3 comments

#54 - Update to NOAA themed pkgdown landing site

Issue - State: closed - Opened by haleyoleynik almost 3 years ago - 1 comment

#53 - Bug in `rdirmultinom`

Issue - State: closed - Opened by James-Thorson-NOAA almost 3 years ago - 1 comment

#52 - Different ecov obs error options for multiple ecovs

Issue - State: closed - Opened by brianstock almost 3 years ago - 1 comment

#51 - table of parameter estimates

Issue - State: closed - Opened by timjmiller about 3 years ago - 2 comments

#50 - Report abundance or total biomass | HTML results

Issue - State: closed - Opened by ejosymart about 3 years ago - 6 comments

#49 - Dirichlet sampling within rdirmultinom

Issue - State: closed - Opened by seananderson about 3 years ago - 2 comments

#48 - do.fit error for butterfish

Issue - State: closed - Opened by brianstock-NOAA about 3 years ago - 2 comments

#47 - check_estimability error

Issue - State: closed - Opened by brianstock-NOAA about 3 years ago - 1 comment

#46 - log catch/index residuals do not use bias correction

Issue - State: closed - Opened by brianstock-NOAA over 3 years ago - 1 comment
Labels: bug

#45 - error reporting within fit_wham and fit_tmb

Issue - State: closed - Opened by timjmiller over 3 years ago - 2 comments

#43 - first version of read_asap3_fit

Pull Request - State: closed - Opened by liz-brooks over 3 years ago

#42 - HTML results not showing

Issue - State: closed - Opened by JDeroba over 3 years ago - 12 comments

#41 - plot multiple projections

Issue - State: closed - Opened by JDeroba over 3 years ago - 3 comments

#40 - Plot_wham_output() missing variable yr.col

Issue - State: open - Opened by tcarruth over 3 years ago - 2 comments

#39 - Ex1 warnings

Issue - State: closed - Opened by brianstock-NOAA over 3 years ago

#38 - pred_IAA is expected in terms of numbers on R side

Issue - State: closed - Opened by timjmiller over 3 years ago

#36 - Question # Survey Index Specifications

Issue - State: closed - Opened by ejosymart over 3 years ago - 1 comment

#35 - Very minor: link to ASAP data description

Issue - State: closed - Opened by tcarruth over 3 years ago - 1 comment

#34 - Very minor: vignette link not working

Issue - State: closed - Opened by tcarruth over 3 years ago - 2 comments

#33 - Matrix and TMB package version issues

Issue - State: closed - Opened by brianstock-NOAA almost 4 years ago - 1 comment

#32 - WEIGHT AT AGE POINTERS

Issue - State: closed - Opened by ejosymart almost 4 years ago - 4 comments
Labels: bug, question

#31 - Warning: NaN sel par

Issue - State: closed - Opened by brianstock-NOAA almost 4 years ago

#30 - Aggregate index

Issue - State: closed - Opened by ejosymart almost 4 years ago - 1 comment

#29 - How are selectivity models and parameters defined in the ASAP3 file?

Issue - State: closed - Opened by brianstock-NOAA about 4 years ago - 3 comments

#28 - Error in integrate(function(x) exp(-(spline(x) - nll))

Issue - State: closed - Opened by Charles-Adams-NOAA about 4 years ago - 2 comments

#27 - 'pivot_longer' is not an exported object from 'namespace:tidyr'

Issue - State: closed - Opened by Charles-Adams-NOAA about 4 years ago - 2 comments

#26 - Plot option to label ages not beginning with 1

Issue - State: closed - Opened by Charles-Adams-NOAA about 4 years ago - 4 comments
Labels: enhancement

#25 - Warning: font family not found in Windows font database

Issue - State: closed - Opened by brianstock-NOAA about 4 years ago - 3 comments
Labels: bug

#24 - R/TMB sometimes crashes simulating data

Issue - State: closed - Opened by brianstock-NOAA about 4 years ago - 2 comments

#23 - prepare_wham_input does not use several values from ASAP3 data file

Issue - State: closed - Opened by brianstock-NOAA about 4 years ago - 3 comments
Labels: enhancement

#22 - Fix error reporting

Issue - State: closed - Opened by brianstock-NOAA about 4 years ago
Labels: to do

#21 - Dense hessian when only NAA-1 (recruitment) are random effects

Issue - State: open - Opened by brianstock-NOAA over 4 years ago - 1 comment
Labels: enhancement

#20 - Error setting F = 0 in projections with random effects on M

Issue - State: open - Opened by brianstock-NOAA over 4 years ago
Labels: bug

#19 - No stock-recruit function for SCAA model

Issue - State: closed - Opened by brianstock-NOAA over 4 years ago - 2 comments
Labels: enhancement

#17 - warnings when run m1 on Windows

Issue - State: closed - Opened by cmlegault about 5 years ago - 2 comments

#16 - line 20 of script returns error

Issue - State: closed - Opened by jimianelli about 5 years ago - 7 comments

#15 - package install fails since removing project_wham.r

Issue - State: closed - Opened by timjmiller over 5 years ago - 1 comment
Labels: bug

#14 - Move documentation + tutorial to static html via pkgdown

Issue - State: closed - Opened by brianstock over 5 years ago - 1 comment
Labels: to do

#13 - add forecasting to wham

Issue - State: closed - Opened by timjmiller over 5 years ago - 1 comment
Labels: to do

#12 - Error in plot_wham_output

Issue - State: closed - Opened by brianstock over 5 years ago
Labels: bug

#11 - Ex with environmental covariate

Issue - State: closed - Opened by brianstock over 5 years ago
Labels: to do

#10 - Automated testing via testthat package

Issue - State: closed - Opened by brianstock over 5 years ago - 1 comment
Labels: to do

#9 - One step ahead residuals for age comp

Issue - State: closed - Opened by brianstock over 5 years ago - 3 comments
Labels: to do

#8 - bring in changes from master

Pull Request - State: closed - Opened by timjmiller over 5 years ago

#7 - fixed small errors in SNEMA yellowtail ex

Pull Request - State: closed - Opened by brianstock over 5 years ago

#6 - Error in install with vignette

Issue - State: closed - Opened by timjmiller over 5 years ago - 1 comment
Labels: install

#5 - Options for output plots as .png and .html

Issue - State: closed - Opened by brianstock over 5 years ago - 1 comment
Labels: to do

#4 - potential error during installation of wham

Issue - State: closed - Opened by timjmiller over 5 years ago
Labels: install

#3 - Enable use of previous versions of wham.cpp

Issue - State: closed - Opened by brianstock over 5 years ago - 2 comments

#2 - Warnings from make_wham_plots.r

Issue - State: closed - Opened by brianstock over 5 years ago - 2 comments
Labels: bug

#1 - Hard-coded dir in wham_v1.cpp

Issue - State: closed - Opened by brianstock over 5 years ago
Labels: to do