thomasp85/mzid issues and pull requests

#33 - Bioc and github repos

Issue - State: open - Opened by lgatto almost 6 years ago - 8 comments

#32 - mapply error: 'zero-length inputs cannot be mixed with those of non-zero length'

Issue - State: closed - Opened by TessaGillett almost 6 years ago - 11 comments

#31 - mzID returning mapply error

Issue - State: closed - Opened by videlc over 8 years ago - 7 comments

#30 - duplicated generics

Issue - State: closed - Opened by lgatto over 9 years ago - 5 comments
Labels: enhancement

#29 - use "location" instead of the "name" attribute

Pull Request - State: closed - Opened by sgibb almost 10 years ago - 1 comment

#28 - export S4 classes mzID and mzIDCollection; closes #26

Pull Request - State: closed - Opened by sgibb about 10 years ago

#27 - add id filename to flatten output

Pull Request - State: closed - Opened by sgibb about 10 years ago

#26 - export `mzID` and `mzIDCollection` classes

Issue - State: closed - Opened by sgibb about 10 years ago - 1 comment

#25 - add missing newline

Pull Request - State: closed - Opened by sgibb about 10 years ago - 1 comment

#24 - empty mzID object

Issue - State: closed - Opened by lgatto over 10 years ago - 4 comments

#23 - adding scan number(s)

Pull Request - State: closed - Opened by vladpetyuk over 10 years ago

#22 - Find solution for avoiding toLower of attribute names

Issue - State: closed - Opened by thomasp85 over 10 years ago - 6 comments
Labels: enhancement

#21 - test for existence of files but only if it is not a remote resource

Pull Request - State: closed - Opened by sgibb almost 11 years ago

#20 - add XML::free and XML::xmlChildren to NAMESPACE

Pull Request - State: closed - Opened by sgibb almost 11 years ago - 5 comments

#19 - test for existence of files

Pull Request - State: closed - Opened by sgibb almost 11 years ago - 2 comments

#18 - create mzR compatible acquisitionNum column

Pull Request - State: closed - Opened by sgibb almost 11 years ago - 1 comment

#17 - introduce translateNativeIDs argument

Pull Request - State: closed - Opened by sgibb almost 11 years ago - 1 comment

#16 - Update all class definitions to use the, as of R3.0, slots argument rather than representation

Issue - State: closed - Opened by thomasp85 about 11 years ago - 6 comments
Labels: enhancement

#15 - Should the content of mzID objects be mutable?

Issue - State: closed - Opened by thomasp85 about 11 years ago - 2 comments
Labels: question

#14 - Standard plot function for mzID objects

Issue - State: closed - Opened by thomasp85 about 11 years ago - 1 comment
Labels: enhancement

#13 - Rewrite parser to access file with SAX

Issue - State: closed - Opened by thomasp85 about 11 years ago - 2 comments
Labels: enhancement

#12 - Capability for reading compressed mzIdentML files

Issue - State: closed - Opened by vladpetyuk about 11 years ago - 3 comments

#11 - Bug with reading the mzid file from OMSSA

Issue - State: closed - Opened by wenbostar about 11 years ago - 6 comments

#10 - Dealing with memory leak associated with parsing XML files using XML package.

Issue - State: closed - Opened by vladpetyuk about 11 years ago - 8 comments
Labels: bug

#9 - full support mzid 1.0 and 1.1

Pull Request - State: closed - Opened by lgatto over 11 years ago - 1 comment

#8 - Issues with mzid v1.0/v1.1

Issue - State: closed - Opened by lgatto over 11 years ago - 2 comments

#7 - Sync with v0.99.2 from Bioc

Pull Request - State: closed - Opened by lgatto over 11 years ago

#6 - Error when no PSM in mzid

Issue - State: closed - Opened by wenbostar over 11 years ago - 13 comments

#5 - added description of no.redundancy argument

Pull Request - State: closed - Opened by vladpetyuk over 11 years ago

#4 - Adding lost v1.0 support.