thijsjanzen/nLTT issues and pull requests

#60 - Update CI badges

Pull Request - State: closed - Opened by Neves-P over 2 years ago

#59 - noSuggests CRAN

Issue - State: closed - Opened by thijsjanzen over 2 years ago - 4 comments

#58 - Nicer and reproducible examples

Issue - State: open - Opened by EvoLandEco about 3 years ago

#57 - switch to GitHub Actions

Issue - State: closed - Opened by thijsjanzen about 4 years ago - 2 comments

#56 - master broken

Issue - State: closed - Opened by richelbilderbeek over 4 years ago - 2 comments

#55 - Fix lintr warnings in nltt_diff_exact_extinct. Progress #52

Pull Request - State: closed - Opened by Neves-P almost 5 years ago - 2 comments

#54 - Add Neves-P to DESCRIPTION as a contributor

Issue - State: closed - Opened by richelbilderbeek almost 5 years ago - 1 comment

#53 - Test last line of code

Issue - State: closed - Opened by richelbilderbeek almost 5 years ago - 1 comment

#52 - Fix lintr warnings

Issue - State: closed - Opened by richelbilderbeek almost 5 years ago - 12 comments

#51 - Add full (non-reconstructed) LTT functionality

Pull Request - State: closed - Opened by Neves-P about 5 years ago - 5 comments

#50 - indirect nLTT is not 100% accurate

Issue - State: closed - Opened by thijsjanzen about 5 years ago - 5 comments

#49 - Fix MacOS build

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 3 comments

#48 - Use 'nltts_diff'

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 1 comment

#47 - Added Log transform

Pull Request - State: closed - Opened by thijsjanzen over 5 years ago - 4 comments

#46 - Submitting to CRAN

Issue - State: closed - Opened by thijsjanzen over 5 years ago - 6 comments

#45 - test fail

Issue - State: closed - Opened by thijsjanzen over 5 years ago - 3 comments

#44 - Add log transform number of lineages option

Issue - State: closed - Opened by thijsjanzen over 5 years ago - 6 comments

#43 - Fix ABC issue in 'Walkthrough' vignette

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 2 comments

#42 - nLTT incompatible with R 3.6.0

Issue - State: closed - Opened by thijsjanzen almost 6 years ago - 3 comments

#41 - New random number generator on CRAN

Issue - State: closed - Opened by thijsjanzen almost 6 years ago - 5 comments

#40 - Update README.md

Pull Request - State: closed - Opened by maelle over 6 years ago - 4 comments

#39 - CRAN metadata issue

Issue - State: closed - Opened by thijsjanzen over 6 years ago - 1 comment

#38 - Bug in nltts_plot

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 1 comment

#37 - Polytomies

Issue - State: open - Opened by thijsjanzen almost 7 years ago - 1 comment

#36 - Requires testit package

Pull Request - State: closed - Opened by SimonGreenhill over 7 years ago - 3 comments

#35 - panDoc related errors

Issue - State: closed - Opened by thijsjanzen almost 8 years ago - 14 comments

#34 - nLTT: for ultrametric trees only?

Issue - State: closed - Opened by richelbilderbeek almost 8 years ago - 1 comment

#33 - nLTT cannot handle high resolution?

Issue - State: closed - Opened by richelbilderbeek almost 8 years ago - 4 comments

#32 - nLTT is present less around 0.5

Issue - State: closed - Opened by richelbilderbeek almost 8 years ago - 17 comments

#31 - nLTTstat_exact on two rcoal trees fails

Issue - State: closed - Opened by richelbilderbeek almost 8 years ago - 4 comments

#30 - Decrease big-O for nltt_diff_exact_norm_brts

Issue - State: closed - Opened by richelbilderbeek almost 8 years ago - 1 comment

#29 - Add CONTRIBUTING

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 2 comments

#28 - Add Code of Conduct

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 1 comment

#27 - Deprecating nltt_diff

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 6 comments

#26 - Test 'abc_smc_nltt use' fails

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 10 comments

#25 - nltt_diff_exact cannot handle trees with negative branching times

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 2 comments

#24 - nltt_diff_exact cannot handle trees with stem

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 2 comments

#23 - nltt_diff signals it cannot handle polytomies

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 1 comment

#22 - Is this correct?

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 5 comments

#21 - Suggestion: use packrat

Issue - State: closed - Opened by richelbilderbeek about 8 years ago - 2 comments

#20 - Build Error, package dependency on package 'survival' by package 'Hmisc'

Issue - State: closed - Opened by thijsjanzen about 8 years ago - 3 comments

#19 - Satisfy lintrbot

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 7 comments

#18 - Suggestion: have a develop branch

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 5 comments

#17 - Issues in testthat

Issue - State: closed - Opened by thijsjanzen over 8 years ago - 21 comments

#16 - Check and perhaps merge vignettes

Issue - State: closed - Opened by richelbilderbeek over 8 years ago

#15 - Copy vignettes to Wiki

Issue - State: closed - Opened by thijsjanzen over 8 years ago - 1 comment

#14 - Licensing

Issue - State: closed - Opened by thijsjanzen over 8 years ago - 2 comments

#13 - Other users cannot use nLTT as they should

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 4 comments

#12 - v1.3 check errors

Issue - State: closed - Opened by thijsjanzen over 8 years ago - 2 comments

#11 - Suggestion: release v1.3

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 14 comments

#10 - Suggestion: use Roxygen2

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 2 comments

#9 - nLTT statistic does not take stem into account

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 7 comments

#8 - Trees with rooted edge are nLTT plotted in unexpected way

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 1 comment

#7 - Write test for ABC_SMC

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 3 comments

#6 - nLTTstat_exact: uses cat instead of stop when distance method is incorrect

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 2 comments

#5 - Implement advice from goodpractice package

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 1 comment

#4 - Use tidyr::expand to generate nice series

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 2 comments

#3 - Add codecov

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 1 comment

#2 - Add CRAN badge

Issue - State: closed - Opened by richelbilderbeek over 8 years ago

#1 - Add Travis CI

Issue - State: closed - Opened by richelbilderbeek over 8 years ago - 1 comment

GitHub / thijsjanzen/nLTT issues and pull requests