Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / thibautjombart/apex issues and pull requests

#50 - fix error in add.gaps if phyDat contains not nucleotides sequences

Pull Request - State: closed - Opened by KlausVigo about 7 years ago - 2 comments

#50 - fix error in add.gaps if phyDat contains not nucleotides sequences

Pull Request - State: closed - Opened by KlausVigo about 7 years ago - 2 comments

#49 - Reading fasta files containing amino acid sequences

Issue - State: closed - Opened by mprous1 about 7 years ago - 3 comments

#49 - Reading fasta files containing amino acid sequences

Issue - State: closed - Opened by mprous1 about 7 years ago - 3 comments

#48 - Trouble exporting multidna object as fasta file...

Issue - State: open - Opened by Wesleyhattingh over 8 years ago - 1 comment

#48 - Trouble exporting multidna object as fasta file...

Issue - State: open - Opened by Wesleyhattingh over 8 years ago - 1 comment

#47 - Update DESCRIPTION

Pull Request - State: closed - Opened by zkamvar over 8 years ago

#47 - Update DESCRIPTION

Pull Request - State: closed - Opened by zkamvar over 8 years ago

#46 - CRAN release

Issue - State: closed - Opened by EricArcher over 8 years ago - 7 comments

#46 - CRAN release

Issue - State: closed - Opened by EricArcher over 8 years ago - 7 comments

#45 - Update README to address UX

Pull Request - State: closed - Opened by zkamvar over 8 years ago - 1 comment

#45 - Update README to address UX

Pull Request - State: closed - Opened by zkamvar over 8 years ago - 1 comment

#44 - apex vignette: move importing data before object classes

Issue - State: closed - Opened by zkamvar over 8 years ago - 3 comments

#44 - apex vignette: move importing data before object classes

Issue - State: closed - Opened by zkamvar over 8 years ago - 3 comments

#43 - Utilize basename instead of sapply

Pull Request - State: closed - Opened by zkamvar over 8 years ago - 1 comment

#43 - Utilize basename instead of sapply

Pull Request - State: closed - Opened by zkamvar over 8 years ago - 1 comment

#42 - will need soon multi.AAbin object

Issue - State: open - Opened by KlausVigo over 8 years ago - 1 comment

#42 - will need soon multi.AAbin object

Issue - State: open - Opened by KlausVigo over 8 years ago - 1 comment

#41 - locusNames accessor

Issue - State: closed - Opened by EricArcher over 8 years ago - 1 comment

#41 - locusNames accessor

Issue - State: closed - Opened by EricArcher over 8 years ago - 1 comment

#40 - gap.only vs. exclude.gap.only arguments in accessors

Issue - State: closed - Opened by EricArcher over 8 years ago - 1 comment

#40 - gap.only vs. exclude.gap.only arguments in accessors

Issue - State: closed - Opened by EricArcher over 8 years ago - 1 comment

#39 - replacing @dna by @seq in read.multiphyDat

Pull Request - State: closed - Opened by KlausVigo almost 9 years ago - 3 comments

#39 - replacing @dna by @seq in read.multiphyDat

Pull Request - State: closed - Opened by KlausVigo almost 9 years ago - 3 comments

#38 - Current version (1.0.1) release to CRAN?

Issue - State: closed - Opened by EricArcher about 9 years ago - 1 comment

#38 - Current version (1.0.1) release to CRAN?

Issue - State: closed - Opened by EricArcher about 9 years ago - 1 comment

#37 - apex needs phangorn release

Issue - State: closed - Opened by thibautjombart over 9 years ago - 6 comments
Labels: bug, help wanted, Warnings / NOTES, Priority

#37 - apex needs phangorn release

Issue - State: closed - Opened by thibautjombart over 9 years ago - 6 comments
Labels: bug, help wanted, Warnings / NOTES, Priority

#36 - Document accessors in vignette

Issue - State: closed - Opened by thibautjombart over 9 years ago - 3 comments
Labels: enhancement, documentation

#36 - Document accessors in vignette

Issue - State: closed - Opened by thibautjombart over 9 years ago - 3 comments
Labels: enhancement, documentation

#35 - Bug reported by CRAN

Issue - State: closed - Opened by thibautjombart over 9 years ago
Labels: bug, Priority

#35 - Bug reported by CRAN

Issue - State: closed - Opened by thibautjombart over 9 years ago
Labels: bug, Priority

#34 - had accessors.Rd file written

Pull Request - State: closed - Opened by EricArcher over 9 years ago - 7 comments

#34 - had accessors.Rd file written

Pull Request - State: closed - Opened by EricArcher over 9 years ago - 7 comments

#33 - Author list addition

Pull Request - State: closed - Opened by EricArcher over 9 years ago

#33 - Author list addition

Pull Request - State: closed - Opened by EricArcher over 9 years ago

#32 - Accessors for multidna objects

Pull Request - State: closed - Opened by EricArcher over 9 years ago - 2 comments

#32 - Accessors for multidna objects

Pull Request - State: closed - Opened by EricArcher over 9 years ago - 2 comments

#31 - Create and use accessors

Issue - State: closed - Opened by thibautjombart over 9 years ago - 10 comments
Labels: enhancement, Priority

#31 - Create and use accessors

Issue - State: closed - Opened by thibautjombart over 9 years ago - 10 comments
Labels: enhancement, Priority

#30 - Document add.gaps / rm.gaps

Issue - State: open - Opened by thibautjombart over 9 years ago
Labels: documentation

#30 - Document add.gaps / rm.gaps

Issue - State: open - Opened by thibautjombart over 9 years ago
Labels: documentation

#29 - Add rm.gaps

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment

#29 - Add rm.gaps

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment

#28 - Add add.gaps function for multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments
Labels: enhancement, Priority

#28 - Add add.gaps function for multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments
Labels: enhancement, Priority

#27 - Add [ operator for multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement, Priority

#27 - Add [ operator for multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement, Priority

#26 - Add type of data stored in multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 5 comments
Labels: enhancement

#26 - Add type of data stored in multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 5 comments
Labels: enhancement

#25 - export to seqinr format

Issue - State: closed - Opened by thibautjombart over 9 years ago - 6 comments
Labels: enhancement

#25 - export to seqinr format

Issue - State: closed - Opened by thibautjombart over 9 years ago - 6 comments
Labels: enhancement

#24 - Adapt functions to optional gap-only sequences

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment

#24 - Adapt functions to optional gap-only sequences

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment

#23 - Make gap-only sequences optional in constructors

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments
Labels: enhancement, Priority

#23 - Make gap-only sequences optional in constructors

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments
Labels: enhancement, Priority

#22 - create function to add gap-only sequences

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement

#22 - create function to add gap-only sequences

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement

#21 - Data structure - missing sequences

Issue - State: closed - Opened by thibautjombart over 9 years ago - 4 comments
Labels: question

#21 - Data structure - missing sequences

Issue - State: closed - Opened by thibautjombart over 9 years ago - 4 comments
Labels: question

#20 - Add 'as' methods for our classes

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement

#20 - Add 'as' methods for our classes

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement

#19 - Rationalise the classes

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments
Labels: enhancement

#18 - Add show method for multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement

#17 - Add n.seq.miss to multiphyDat

Issue - State: closed - Opened by thibautjombart over 9 years ago - 3 comments
Labels: enhancement

#16 - Write manuscript

Issue - State: closed - Opened by thibautjombart over 9 years ago - 4 comments

#15 - Five more spaces

Pull Request - State: closed - Opened by yihui over 9 years ago - 1 comment

#14 - Polish vignette.

Issue - State: closed - Opened by thibautjombart over 9 years ago
Labels: documentation

#13 - Ignore empty sequences in s.seq

Issue - State: closed - Opened by thibautjombart over 9 years ago
Labels: documentation

#12 - Expand arguments for multiphyDat2genind

Issue - State: closed - Opened by thibautjombart over 9 years ago
Labels: enhancement

#11 - Release on CRAN!

Issue - State: closed - Opened by thibautjombart over 9 years ago - 2 comments

#10 - make a function to get simple trees from multidna

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: enhancement

#9 - Fix bug in multidna2genind and add test architecture

Pull Request - State: closed - Opened by zkamvar over 9 years ago - 1 comment

#8 - Ready for the first release?

Issue - State: closed - Opened by thibautjombart over 9 years ago - 17 comments

#7 - Naming convention

Issue - State: closed - Opened by KlausVigo over 9 years ago - 1 comment

#6 - Make markdown vignette

Issue - State: closed - Opened by thibautjombart over 9 years ago - 6 comments
Labels: enhancement, documentation

#5 - Example initialize,multiphyDat-method fails

Issue - State: closed - Opened by thibautjombart over 9 years ago - 5 comments
Labels: bug

#4 - NOTE to fix

Issue - State: closed - Opened by thibautjombart over 9 years ago - 1 comment
Labels: Warnings / NOTES

#3 - Add extra arguments to further address #2

Pull Request - State: closed - Opened by zkamvar over 9 years ago - 4 comments

#2 - Add translator from multidna to genind

Issue - State: closed - Opened by zkamvar over 9 years ago - 4 comments

#1 - Add a multiphyDat class

Issue - State: closed - Opened by thibautjombart over 9 years ago - 4 comments
Labels: enhancement