Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / thewtex/ngff-zarr issues and pull requests

#132 - zarr python 3 0 0

Pull Request - State: closed - Opened by thewtex 15 days ago

#131 - Saving images seems to be broken with zarr 3.0.0

Issue - State: closed - Opened by odinsbane 15 days ago - 1 comment

#130 - ENH: c_index argument to ngff_image_to_itk_image

Pull Request - State: closed - Opened by thewtex 18 days ago

#129 - omero

Pull Request - State: closed - Opened by thewtex 20 days ago - 2 comments

#128 - ENH: Support time in ngff_image_to_itk_image

Pull Request - State: closed - Opened by thewtex 20 days ago

#127 - quick start metadata

Pull Request - State: closed - Opened by thewtex 23 days ago

#126 - channel

Pull Request - State: closed - Opened by thewtex about 1 month ago - 2 comments

#125 - Handle downsampling to_multiscales with channel dimension

Issue - State: closed - Opened by will-moore about 1 month ago - 6 comments

#124 - BUG: Write out array dimension_names for OME-Zarr 0.5

Pull Request - State: closed - Opened by thewtex about 2 months ago

#123 - BUG: Add ngff_zarr.zarr_metadata backwards compatibility module

Pull Request - State: closed - Opened by thewtex about 2 months ago

#122 - renaming `zarr_metadata` to `v04.zarr_metadata` breaks downstream libraries

Issue - State: closed - Opened by TimMonko about 2 months ago - 5 comments

#121 - ENH: OME-Zarr format version conversion

Pull Request - State: closed - Opened by thewtex about 2 months ago - 1 comment

#120 - tensorstore cli

Pull Request - State: closed - Opened by thewtex about 2 months ago

#119 - DOC: Describe writing with tensorstore

Pull Request - State: closed - Opened by thewtex about 2 months ago

#118 - from ngff zarr docs

Pull Request - State: closed - Opened by thewtex 2 months ago

#117 - DOC: Improved Python interface docs

Pull Request - State: closed - Opened by thewtex 2 months ago

#116 - Test and document shard usage

Issue - State: open - Opened by thewtex 2 months ago

#115 - DOC: More installation links

Pull Request - State: closed - Opened by thewtex 2 months ago

#113 - doc updates

Pull Request - State: closed - Opened by thewtex 2 months ago

#112 - version 0.1 to 0.3

Pull Request - State: closed - Opened by thewtex 2 months ago

#111 - ENH: Add a test for large image serialization with tensorstore

Pull Request - State: closed - Opened by thewtex 2 months ago

#110 - ENH: tensorstore Zarr 3, OME-Zarr 0.5 support

Pull Request - State: closed - Opened by thewtex 2 months ago - 1 comment

#109 - ENH: Add RFC 2 support

Pull Request - State: closed - Opened by thewtex 2 months ago

#108 - ENH: Add tensorstore write support

Pull Request - State: closed - Opened by thewtex 2 months ago

#107 - validate local

Pull Request - State: closed - Opened by thewtex 2 months ago

#106 - BUG: Bump itkwasm dep to 1.0b183

Pull Request - State: closed - Opened by thewtex 2 months ago

#105 - DOC: Improve documentation of scale factors and interaction with checks

Pull Request - State: closed - Opened by thewtex 2 months ago - 1 comment

#104 - Re-enable ITK bin shrink Linux ARM test

Issue - State: open - Opened by thewtex 2 months ago

#103 - to_multiscales() scale_factor argument question

Issue - State: closed - Opened by kevinyamauchi 2 months ago - 3 comments

#102 - ENH: Test Python 3.13

Pull Request - State: closed - Opened by thewtex 2 months ago

#101 - Re-enable wasm bin-shrink test

Issue - State: open - Opened by thewtex 2 months ago

#100 - COMP: Add Linux ARM Pixi platform configuration

Pull Request - State: closed - Opened by thewtex 2 months ago

#99 - COMP: Update pixi.lock for version 0.33

Pull Request - State: closed - Opened by thewtex 2 months ago

#97 - Test big endian pixel data

Issue - State: open - Opened by thewtex 3 months ago

#96 - Add RFC-4: Axis Anatomical Orientation support

Issue - State: open - Opened by thewtex 3 months ago

#95 - Add RFC-2 Zarr v3 support

Issue - State: closed - Opened by thewtex 3 months ago - 2 comments

#94 - Add OMERO Metadata support

Issue - State: closed - Opened by thewtex 3 months ago

#93 - ENH: Export Zarr Metadata classes from package

Pull Request - State: closed - Opened by thewtex 5 months ago

#92 - ci updates

Pull Request - State: closed - Opened by thewtex 5 months ago

#91 - Enable macOS tests in Pixi CI testings

Issue - State: open - Opened by thewtex 5 months ago

#90 - ENH: Add pixi CI configuration

Pull Request - State: closed - Opened by thewtex 5 months ago

#89 - BUG: Fix CI macos-14 matrix exclusion logic

Pull Request - State: closed - Opened by thewtex 5 months ago

#88 - scale order

Pull Request - State: closed - Opened by thewtex 5 months ago

#87 - CI doesn't run any tests

Issue - State: closed - Opened by btbest 5 months ago - 2 comments

#86 - BUG: Add test for to_multiscales

Pull Request - State: closed - Opened by btbest 5 months ago - 3 comments

#85 - Fix usages of Sets

Pull Request - State: closed - Opened by btbest 5 months ago

#84 - DOC: Add links to other packages

Pull Request - State: closed - Opened by thewtex 6 months ago

#83 - ENH: Update tifffile constraint for zarr file handle fix

Pull Request - State: closed - Opened by thewtex 6 months ago

#82 - BUG: Add tifffile version constraint

Pull Request - State: closed - Opened by thewtex 6 months ago

#81 - DOC: Add itk docs

Pull Request - State: closed - Opened by thewtex 6 months ago

#80 - DOC: Add Python Array API docs

Pull Request - State: closed - Opened by thewtex 6 months ago

#79 - quick start

Pull Request - State: closed - Opened by thewtex 6 months ago

#78 - DOC: Use pixi in the development documentation

Pull Request - State: closed - Opened by thewtex 6 months ago

#77 - pixi

Pull Request - State: closed - Opened by thewtex 6 months ago

#76 - ENH: Test Python 3.12 in CI

Pull Request - State: closed - Opened by thewtex 6 months ago

#75 - ENH: Add cli --help colors

Pull Request - State: closed - Opened by thewtex 8 months ago

#74 - ENH: Bump itkwasm-downsample to support more label image types

Pull Request - State: closed - Opened by thewtex 10 months ago

#73 - BUG: Detect .ome.zarr as supported by NGFF_ZARR

Pull Request - State: closed - Opened by thewtex 11 months ago

#72 - Cucim reader

Pull Request - State: open - Opened by thewtex 11 months ago - 1 comment

#71 - ENH: Test macOS Apple Silicon (ARM) in CI

Pull Request - State: closed - Opened by thewtex 11 months ago - 1 comment

#70 - Enable kvikio GDSStore in cli

Issue - State: open - Opened by thewtex 11 months ago - 1 comment

#69 - Add cucim OpenSlideIO API support to the CLI

Issue - State: open - Opened by thewtex 11 months ago - 1 comment

#68 - DOC: Document CUDA acceleration

Pull Request - State: closed - Opened by thewtex 12 months ago - 4 comments

#67 - Cli io wasm

Pull Request - State: closed - Opened by thewtex about 1 year ago

#66 - DOC: Add some documentation for current methods

Pull Request - State: closed - Opened by thewtex about 1 year ago - 1 comment

#65 - ENH: Default method is ITKWASM_GAUSSIAN

Pull Request - State: closed - Opened by thewtex about 1 year ago

#64 - DOC: Format to_ngff_zarr for myst / autodoc2

Pull Request - State: closed - Opened by thewtex about 1 year ago

#63 - BUG: Pass correct kwarg to LocalCluster for memory_limit

Pull Request - State: closed - Opened by thewtex about 1 year ago

#62 - DOC: myst, autodoc2 supported formatting for to_multiscales, to_ngff_…

Pull Request - State: closed - Opened by thewtex about 1 year ago

#61 - Itkwasm downsample

Pull Request - State: closed - Opened by thewtex about 1 year ago - 1 comment

#60 - Why are all zero after conversion in scale0?

Issue - State: open - Opened by maoyuanpeng about 1 year ago - 1 comment

#59 - BUG: Reset image.computed_callbacks after calling

Pull Request - State: closed - Opened by thewtex about 1 year ago

#58 - BUG: Support reading and writing an OME-Zarr created by omero-zarr

Pull Request - State: closed - Opened by thewtex about 1 year ago

#57 - ENH: Clean up scale cache stores before process exit

Pull Request - State: closed - Opened by thewtex about 1 year ago

#56 - Sigma

Pull Request - State: closed - Opened by thewtex about 1 year ago

#54 - Add itkwasm-downsample backend

Issue - State: closed - Opened by thewtex about 1 year ago

#53 - dask-image dependency missing?

Issue - State: closed - Opened by tischi about 1 year ago - 2 comments

#52 - Expose scale factors to the cli

Pull Request - State: closed - Opened by d-v-b over 1 year ago - 1 comment

#51 - BUG: Support dim dict scale factors in _downsample_dask_image

Pull Request - State: closed - Opened by thewtex over 1 year ago

#50 - Scipy py cookie

Pull Request - State: closed - Opened by thewtex over 1 year ago

#49 - Empty `multiscales/multiscaleTransformations` metadata field

Issue - State: closed - Opened by tbirdso over 1 year ago - 1 comment

#48 - Dask task graphs are huge (non-performant) for large data

Issue - State: open - Opened by GFleishman over 1 year ago - 11 comments

#46 - nested separator in to_ngff_zarr, fixed napari display problem

Pull Request - State: closed - Opened by GFleishman over 1 year ago - 2 comments

#45 - Image data not displayed in napari

Issue - State: closed - Opened by GFleishman over 1 year ago - 1 comment

#44 - Document anti-aliasing filters

Issue - State: closed - Opened by thewtex over 1 year ago

#43 - DOC: Factor README docs into Sphinx

Pull Request - State: closed - Opened by thewtex over 1 year ago - 1 comment

#42 - ENH: Add imagecodecs as a cli dependency

Pull Request - State: closed - Opened by thewtex over 1 year ago

#41 - absolute vs. relative scales bug fix in _dim_scale_factors

Pull Request - State: closed - Opened by GFleishman over 1 year ago

#40 - Multiscales bug

Issue - State: closed - Opened by GFleishman over 1 year ago - 4 comments

#39 - set downsampling factors in the cli

Issue - State: open - Opened by d-v-b over 1 year ago - 1 comment

#38 - add imagecodecs dependency

Issue - State: closed - Opened by d-v-b over 1 year ago - 4 comments

#37 - IPython shell command failure

Issue - State: open - Opened by tbirdso over 1 year ago - 2 comments

#36 - BUG: Set units dictionary from CLI instead of updating existing

Pull Request - State: closed - Opened by tbirdso over 1 year ago

#35 - BUG: Do not break task graph for first level

Pull Request - State: closed - Opened by thewtex over 1 year ago - 1 comment

#34 - BUG: Store zarr array regions when caching slabs

Pull Request - State: closed - Opened by thewtex over 1 year ago

#33 - Improper intermediate downscale visible size

Issue - State: closed - Opened by tbirdso over 1 year ago