Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / theosanderson/chronumental issues and pull requests

#34 - adjust python versions in CI

Pull Request - State: closed - Opened by theosanderson 4 months ago

#33 - Fix np.Inf, removed in numpy 2.0

Pull Request - State: closed - Opened by theosanderson 4 months ago

#32 - Horseshoe fix

Pull Request - State: closed - Opened by theosanderson about 1 year ago

#32 - Horseshoe fix

Pull Request - State: closed - Opened by theosanderson about 1 year ago

#31 - Horse shoe like model working branch

Pull Request - State: closed - Opened by theosanderson over 1 year ago

#30 - Add troubleshooting advice for gradient explosions

Pull Request - State: closed - Opened by theosanderson over 1 year ago

#29 - NaN clock rate

Issue - State: closed - Opened by emvolz over 1 year ago - 5 comments

#28 - Support BC or year 0 dates

Issue - State: open - Opened by theosanderson almost 2 years ago

#27 - format and remove old unused eval

Pull Request - State: closed - Opened by theosanderson almost 2 years ago

#26 - Remove variance branch length parameter

Pull Request - State: closed - Opened by theosanderson almost 2 years ago

#25 - Continuous sample times rather than strict dates

Issue - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#24 - Usage not showing up in documentation

Issue - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#23 - parameter to pass alternative to "strain" as key col

Issue - State: open - Opened by theosanderson almost 2 years ago

#22 - Update input_mod.py

Pull Request - State: closed - Opened by theosanderson almost 2 years ago

#21 - Add docs

Pull Request - State: closed - Opened by theosanderson over 2 years ago

#20 - update

Pull Request - State: closed - Opened by theosanderson over 2 years ago

#19 - Switch from tqdm to alive progress

Pull Request - State: closed - Opened by theosanderson over 2 years ago

#18 - Switch for tqdm to alive_progress

Issue - State: closed - Opened by theosanderson over 2 years ago - 1 comment

#16 - Create LICENSE

Pull Request - State: closed - Opened by theosanderson over 2 years ago

#15 - License?

Issue - State: closed - Opened by tomkinsc over 2 years ago - 1 comment

#14 - Runtime error with example

Issue - State: closed - Opened by joetsui1994 over 2 years ago - 4 comments

#13 - Remove variance_branch_length

Issue - State: closed - Opened by theosanderson about 3 years ago - 1 comment

#12 - Do not merge: Working branch for possible ARC model

Pull Request - State: open - Opened by theosanderson about 3 years ago - 1 comment

#11 - Refactor for new models

Pull Request - State: closed - Opened by theosanderson about 3 years ago

#10 - Use closest to root as ref point rather than oldest?

Issue - State: open - Opened by theosanderson about 3 years ago

#9 - Explain when can't find ref point

Pull Request - State: closed - Opened by theosanderson about 3 years ago

#8 - Surface better error when taxa don't match "strain"

Issue - State: closed - Opened by theosanderson about 3 years ago

#7 - Add saving best parameters, and ability to undo per-site norm in units

Pull Request - State: closed - Opened by theosanderson about 3 years ago

#6 - Keep params that achieve very lowest loss

Issue - State: closed - Opened by theosanderson about 3 years ago

#5 - Better handle trees with distances normalised per site

Issue - State: closed - Opened by theosanderson about 3 years ago

#4 - Update readme

Pull Request - State: closed - Opened by theosanderson about 3 years ago

#3 - Fix formatting issue

Pull Request - State: closed - Opened by theosanderson about 3 years ago

#2 - Need to learn a param for root date

Issue - State: closed - Opened by theosanderson about 3 years ago - 1 comment

#1 - Check behaviour with initial nodes named, unnamed

Issue - State: closed - Opened by theosanderson about 3 years ago