theislab/spapros issues and pull requests

#291 - [DEPENDABOT]: Bump virtualenv from 20.21.1 to 20.24.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#290 - [DEPENDABOT]: Bump ipykernel from 5.4.3 to 5.5.6

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#289 - [DEPENDABOT]: Bump markdown-it-py from 2.2.0 to 3.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#288 - Mention python package in docs

Pull Request - State: closed - Opened by LouisK92 over 1 year ago - 1 comment

#287 - Development

Pull Request - State: closed - Opened by LouisK92 over 1 year ago - 1 comment

#286 - [DEPENDABOT]: Bump pillow from 9.0.0 to 9.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: DEPENDABOT

#285 - [DEPENDABOT]: Bump sphinx-gallery from 0.10.1 to 0.14.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: DEPENDABOT

#284 - Development

Pull Request - State: closed - Opened by LouisK92 over 1 year ago - 1 comment

#283 - [DEPENDABOT]: Bump sphinx-rtd-theme from 0.5.2 to 1.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#282 - [DEPENDABOT]: Bump leidenalg from 0.8.10 to 0.10.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#281 - [DEPENDABOT]: Bump ipywidgets from 7.7.1 to 8.1.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#280 - [DEPENDABOT]: Bump questionary from 1.10.0 to 2.0.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#279 - [DEPENDABOT]: Bump mshick/add-pr-comment from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#278 - [DEPENDABOT]: Bump crazy-max/ghaction-github-labeler from 4.0.0 to 4.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#277 - [DEPENDABOT]: Bump actions/cache from 3.0.8 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#276 - [DEPENDABOT]: Bump safety from 1.10.3 to 2.3.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#275 - Development

Pull Request - State: closed - Opened by LouisK92 over 1 year ago - 2 comments

#274 - [DEPENDABOT]: Bump sphinx from 4.5.0 to 5.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#273 - [DEPENDABOT]: Bump send2trash from 1.8.0 to 1.8.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: DEPENDABOT

#272 - Development

Pull Request - State: closed - Opened by LouisK92 over 1 year ago - 1 comment

#271 - end to end tutorial, time measurement of spapros steps, and small multiple fixes

Pull Request - State: closed - Opened by LouisK92 over 1 year ago - 1 comment
Labels: bug

#270 - knn_overlap evaluation fails when not enough hvgs in selected set

Issue - State: closed - Opened by LouisK92 over 1 year ago - 1 comment
Labels: bug

#269 - added description

Pull Request - State: closed - Opened by jwrth over 1 year ago - 1 comment

#268 - masked_dotplot does not allow NaNs in selector.probeset["celltypes_marker"]

Issue - State: closed - Opened by jwrth over 1 year ago - 2 comments
Labels: bug

#267 - Design probe panels for multiple experiments

Issue - State: closed - Opened by nikofleischer over 1 year ago - 3 comments
Labels: question

#266 - New version release

Pull Request - State: closed - Opened by LouisK92 almost 2 years ago

#265 - Fix memory leak and forest classification for 2 cell types case

Pull Request - State: closed - Opened by LouisK92 almost 2 years ago
Labels: bug

#261 - xgboost Invalid shape of labels during evaluation

Issue - State: closed - Opened by pakiessling almost 2 years ago - 5 comments
Labels: bug

#260 - Run parallelized spapros

Issue - State: closed - Opened by simomounir almost 2 years ago - 2 comments
Labels: bug

#259 - Check that all genes are in adata.var_names when evaluating a probe set

Issue - State: closed - Opened by LouisK92 almost 2 years ago - 1 comment
Labels: enhancement

#258 - Feature Request Summary

Issue - State: open - Opened by simomounir almost 2 years ago
Labels: enhancement

#257 - Masked dotplot looks for genes in adata.raw

Issue - State: closed - Opened by simomounir almost 2 years ago - 5 comments
Labels: bug

#256 - Merge pull request #255 from theislab/metaclass_bug

Pull Request - State: closed - Opened by LouisK92 almost 2 years ago

#255 - Metaclass bug

Pull Request - State: closed - Opened by LouisK92 almost 2 years ago

#254 - Metaclass bug

Pull Request - State: closed - Opened by LouisK92 almost 2 years ago

#253 - Metaclass TypeError

Issue - State: closed - Opened by simomounir almost 2 years ago - 2 comments
Labels: bug

#252 - [DEPENDABOT]: Bump pillow from 9.0.0 to 9.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: DEPENDABOT

#251 - [DEPENDABOT]: Bump actions/setup-python from 2.3.1 to 4.5.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: DEPENDABOT

#250 - [DEPENDABOT]: Bump actions/download-artifact from 2.1.0 to 3.0.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: DEPENDABOT

#249 - [DEPENDABOT]: Bump actions/setup-python from 2.3.1 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: DEPENDABOT

#248 - [DEPENDABOT]: Bump actions/setup-python from 2.3.1 to 4.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: DEPENDABOT

#247 - [DEPENDABOT]: Bump actions/download-artifact from 2.1.0 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: DEPENDABOT

#246 - [DEPENDABOT]: Bump actions/setup-python from 2.3.1 to 4.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: DEPENDABOT

#245 - AttributeError on evaluate_probest()

Issue - State: closed - Opened by pvtodorov over 2 years ago - 3 comments
Labels: bug

#244 - import spapros fails with new matplotlib version 3.6.0

Issue - State: closed - Opened by LouisK92 over 2 years ago - 3 comments

#243 - Important cookietemple template update 2.1.1 released!

Pull Request - State: closed - Opened by Zethson over 2 years ago - 1 comment
Labels: chore

#242 - Development

Pull Request - State: closed - Opened by LouisK92 over 2 years ago

#241 - [DEPENDABOT]: Bump actions/download-artifact from 2.1.0 to 3.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: DEPENDABOT

#240 - [DEPENDABOT]: Bump actions/setup-python from 2.3.1 to 4.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: DEPENDABOT

#239 - update dev

Pull Request - State: closed - Opened by LouisK92 over 2 years ago - 1 comment

#238 - [DEPENDABOT]: Bump pillow from 9.0.0 to 9.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: DEPENDABOT

#237 - [DEPENDABOT]: Bump pep8-naming from 0.12.1 to 0.13.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#236 - [DEPENDABOT]: Bump actions/cache from 3.0.7 to 3.0.8

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#235 - [DEPENDABOT]: Bump actions/upload-artifact from 2.3.1 to 3.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#234 - pip install spapros leads to segmentation fault in knn metrics at sc.pp.neighbors

Issue - State: closed - Opened by LouisK92 over 2 years ago - 1 comment
Labels: bug

#233 - Crash during Probe Evaluation

Issue - State: closed - Opened by pakiessling over 2 years ago - 6 comments
Labels: bug

#232 - Question: supply DEG list and weights from edgeR

Issue - State: closed - Opened by pvtodorov over 2 years ago - 1 comment
Labels: question

#231 - Is it possible to save the probeselector to a file?

Issue - State: closed - Opened by pakiessling over 2 years ago - 3 comments
Labels: question

#230 - sp.pl.masked_dotplot shows fewer genes than ProbesetSelector.plot_clf_genes

Issue - State: closed - Opened by LouisK92 over 2 years ago - 2 comments
Labels: bug

#229 - [DEPENDABOT]: Bump panel from 0.12.7 to 0.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#228 - [DEPENDABOT]: Bump scikit-learn from 1.0.2 to 1.1.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#227 - update dev to main

Pull Request - State: closed - Opened by LouisK92 over 2 years ago

#226 - Development

Pull Request - State: closed - Opened by LouisK92 over 2 years ago

#225 - [DEPENDABOT]: Bump actions/checkout from 2.4.0 to 3.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#224 - [DEPENDABOT]: Bump codecov/codecov-action from 2.1.0 to 3.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#223 - Create non-transparent pngs for example images to support dark mode docs

Issue - State: closed - Opened by LouisK92 over 2 years ago
Labels: enhancement

#222 - Development

Pull Request - State: closed - Opened by LouisK92 over 2 years ago - 1 comment

#221 - [DEPENDABOT]: Bump actions/cache from 2.1.7 to 3.0.7

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#220 - [DEPENDABOT]: Bump crazy-max/ghaction-github-labeler from 3.1.1 to 4.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#219 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: DEPENDABOT

#218 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.20.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: DEPENDABOT

#217 - [DEPENDABOT]: Bump xgboost from 1.5.0 to 1.6.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: DEPENDABOT

#216 - Descriptive prints for Selector and Evaluator

Issue - State: closed - Opened by LouisK92 almost 3 years ago
Labels: enhancement

#215 - [DEPENDABOT]: Bump xgboost from 1.5.0 to 1.6.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: DEPENDABOT

#214 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.19.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: DEPENDABOT

#213 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.18.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#212 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.18.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#211 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.17.6

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#210 - [DEPENDABOT]: Bump xgboost from 1.5.0 to 1.5.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#209 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.17.5

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#208 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5.15.0 to 5.16.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#207 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#206 - [DEPENDABOT]: Bump rich from 10.14.0 to 10.16.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#205 - Check why combinatorial markers are shown for filtered cell types

Issue - State: closed - Opened by strasserle about 3 years ago - 1 comment
Labels: bug

#204 - tutorials (write notebook structure with comments or something)

Issue - State: closed - Opened by strasserle about 3 years ago - 1 comment

#203 - [DEPENDABOT]: Bump coverage from 6.1.2 to 6.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#202 - [DEPENDABOT]: Bump actions/download-artifact from 2.0.10 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#201 - [DEPENDABOT]: Bump rich from 10.14.0 to 10.16.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#200 - [DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#199 - [DEPENDABOT]: Bump rich from 10.14.0 to 10.16.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#198 - [DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 2.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#197 - [DEPENDABOT]: Bump rich from 10.14.0 to 10.15.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#196 - [DEPENDABOT]: Bump rich from 10.14.0 to 10.15.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: DEPENDABOT

#195 - [DEPENDABOT]: Bump flake8-bugbear from 21.9.2 to 21.11.29

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#194 - [DEPENDABOT]: Bump actions/setup-python from 2.3.0 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#193 - [DEPENDABOT]: Bump typeguard from 2.13.0 to 2.13.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#192 - [DEPENDABOT]: Bump actions/cache from 2.1.6 to 2.1.7

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#191 - [DEPENDABOT]: Bump black from 21.11b0 to 21.11b1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#190 - [DEPENDABOT]: Bump coverage from 5.5 to 6.1.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

#189 - [DEPENDABOT]: Bump actions/setup-python from 2.2.2 to 2.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: DEPENDABOT

GitHub / theislab/spapros issues and pull requests