theislab/spapros issues and pull requests

#391 - Run evaluation methods always include a reference?

Issue - State: open - Opened by KunHHE about 2 months ago
Labels: question

#390 - Advanced evaluation for multiple selections (first selection + second selection (including pre-select genes)

Issue - State: closed - Opened by KunHHE about 2 months ago
Labels: question

#389 - If have a 140-gene list, then want to scale the gene panel to 500

Issue - State: closed - Opened by KunHHE about 2 months ago - 5 comments
Labels: question

#388 - the select_set and dotplot show gene names but not by ensembl_ID

Issue - State: closed - Opened by KunHHE about 2 months ago - 1 comment
Labels: question

#387 - probe set evaluation without sc-RNA-seq reference

Issue - State: closed - Opened by KunHHE 2 months ago - 4 comments
Labels: question

#386 - identification of spatial genes (genes expressed by different cell types)

Issue - State: closed - Opened by shobhitagrawal1 3 months ago - 5 comments
Labels: question

#385 - Update readme

Pull Request - State: closed - Opened by LouisK92 3 months ago - 1 comment

#384 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.12.2

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: DEPENDABOT

#383 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.11.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: DEPENDABOT

#382 - [DEPENDABOT]: Bump networkx from 3.2.1 to 3.4.2 in /docs

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#381 - [DEPENDABOT]: Bump networkx from 3.2.1 to 3.4.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: DEPENDABOT

#380 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.4.3

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#379 - [DEPENDABOT]: Bump argcomplete from 3.2.3 to 3.5.1

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#378 - [DEPENDABOT]: Bump codecov/codecov-action from 4.3.1 to 4.6.0

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#377 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.10.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: DEPENDABOT

#376 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.4.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: DEPENDABOT

#375 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.10.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: DEPENDABOT

#374 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.10.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: DEPENDABOT

#373 - [DEPENDABOT]: Bump contourpy from 1.2.0 to 1.3.0

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: DEPENDABOT

#372 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: DEPENDABOT

#371 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: DEPENDABOT

#370 - [DEPENDABOT]: Bump pynndescent from 0.5.11 to 0.5.13 in /docs

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: DEPENDABOT

#369 - [DEPENDABOT]: Bump argcomplete from 3.2.3 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#368 - [DEPENDABOT]: Bump contourpy from 1.2.0 to 1.2.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#367 - [DEPENDABOT]: Bump codecov/codecov-action from 4.3.1 to 4.5.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#366 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#365 - merge main into dev

Pull Request - State: closed - Opened by LouisK92 6 months ago - 1 comment

#364 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.3.6

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#363 - [DEPENDABOT]: Bump lxml from 5.1.0 to 5.3.0

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: DEPENDABOT

#362 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.3.5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#361 - Kernel crashing with dataset of size 38237 × 32285

Issue - State: open - Opened by HeleneHemmer 7 months ago - 11 comments
Labels: bug

#360 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.3.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: DEPENDABOT

#359 - [DEPENDABOT]: Bump actions/download-artifact from 3.0.2 to 4.1.8

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: DEPENDABOT

#358 - conda installation

Issue - State: closed - Opened by heylf 8 months ago - 1 comment
Labels: enhancement

#357 - adapter tutorials to new framework

Pull Request - State: closed - Opened by lisa-sousa 8 months ago - 2 comments
Labels: chore

#356 - [DEPENDABOT]: Bump actions/checkout from 4.1.4 to 4.1.7

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#355 - [DEPENDABOT]: Bump typing-extensions from 4.10.0 to 4.12.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#354 - [DEPENDABOT]: Bump typing-extensions from 4.10.0 to 4.12.1

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: DEPENDABOT

#353 - [DEPENDABOT]: Bump typing-extensions from 4.10.0 to 4.12.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: DEPENDABOT

#352 - [DEPENDABOT]: Bump actions/checkout from 4.1.4 to 4.1.6

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: DEPENDABOT

#351 - [DEPENDABOT]: Bump typing-extensions from 4.10.0 to 4.11.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: DEPENDABOT

#350 - [DEPENDABOT]: Bump actions/checkout from 4.1.4 to 4.1.5

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: DEPENDABOT

#349 - [DEPENDABOT]: Bump lxml from 5.1.0 to 5.2.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: DEPENDABOT

#348 - [DEPENDABOT]: Bump traitlets from 5.14.2 to 5.14.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: DEPENDABOT

#347 - [DEPENDABOT]: Bump codecov/codecov-action from 4.3.0 to 4.3.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: DEPENDABOT

#346 - [DEPENDABOT]: Bump pre-commit-hooks from 4.5.0 to 4.6.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: DEPENDABOT

#345 - [DEPENDABOT]: Bump mistune from 0.8.4 to 3.0.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: DEPENDABOT

#344 - [DEPENDABOT]: Bump plumbum from 1.8.2 to 1.8.3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#343 - [DEPENDABOT]: Bump lxml from 5.1.0 to 5.2.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: DEPENDABOT

#342 - [DEPENDABOT]: Bump nbformat from 5.10.3 to 5.10.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#341 - [DEPENDABOT]: Bump nbconvert from 6.5.4 to 7.16.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: DEPENDABOT

#340 - [DEPENDABOT]: Bump actions/upload-artifact from 3.1.0 to 4.3.3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: DEPENDABOT

#339 - [DEPENDABOT]: Bump actions/download-artifact from 3.0.2 to 4.1.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: DEPENDABOT

#338 - [DEPENDABOT]: Bump actions/checkout from 4.1.3 to 4.1.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#337 - [DEPENDABOT]: Bump sphinx-rtd-theme from 1.3.0 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#336 - [DEPENDABOT]: Bump statsmodels from 0.14.1 to 0.14.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#335 - [DEPENDABOT]: Bump idna from 3.6 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#334 - [DEPENDABOT]: Bump networkx from 3.2.1 to 3.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: DEPENDABOT

#333 - [DEPENDABOT]: Bump codecov/codecov-action from 3.1.0 to 4.3.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#332 - [DEPENDABOT]: Bump actions/checkout from 4.1.2 to 4.1.3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#331 - [DEPENDABOT]: Bump peaceiris/actions-gh-pages from 3.8.0 to 4.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#330 - [DEPENDABOT]: Bump pillow from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#329 - [DEPENDABOT]: Bump sphinx from 5.3.0 to 7.2.6

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#328 - [DEPENDABOT]: Bump array-api-compat from 1.5.1 to 1.6 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#327 - [DEPENDABOT]: Bump questionary from 1.10.0 to 2.0.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: DEPENDABOT

#326 - [DEPENDABOT]: Bump nbconvert from 6.5.4 to 7.16.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: DEPENDABOT

#325 - [DEPENDABOT]: Bump parso from 0.8.3 to 0.8.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#324 - [DEPENDABOT]: Bump crazy-max/ghaction-github-labeler from 4.1.0 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#323 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5 to 6

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#322 - [DEPENDABOT]: Bump actions/cache from 3.3.1 to 4.0.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: DEPENDABOT

#321 - pre commit correction of readthedocs.yml

Pull Request - State: closed - Opened by LouisK92 10 months ago

#320 - Update .readthedocs.yml

Pull Request - State: closed - Opened by LouisK92 10 months ago

#319 - [DEPENDABOT]: Bump ipykernel from 6.29.3 to 6.29.4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: DEPENDABOT

#318 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.5.1 to 1.8.14

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: DEPENDABOT

#317 - [DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: DEPENDABOT

#316 - [DEPENDABOT]: Bump actions/setup-python from 2 to 5

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: DEPENDABOT

#315 - [DEPENDABOT]: Bump pillow from 10.2.0 to 10.3.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: DEPENDABOT

#314 - Update basic evaluation tutorial

Pull Request - State: closed - Opened by LouisK92 11 months ago - 1 comment

#313 - Release 0.1.5

Pull Request - State: closed - Opened by LouisK92 11 months ago - 1 comment

#312 - Development

Pull Request - State: closed - Opened by LouisK92 11 months ago - 2 comments

#311 - Python version compatibility

Issue - State: closed - Opened by JBreunig 12 months ago - 2 comments
Labels: question

#310 - Matplotlib compatability

Issue - State: closed - Opened by Laolga about 1 year ago - 3 comments
Labels: bug

#309 - [DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: DEPENDABOT

#308 - [DEPENDABOT]: Bump virtualenv from 20.21.1 to 20.24.6

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#307 - [DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#306 - [DEPENDABOT]: Bump scikit-learn from 1.0.2 to 1.3.2 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#305 - [DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#304 - [DEPENDABOT]: Bump scikit-learn from 1.0.2 to 1.3.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#303 - [DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#302 - [DEPENDABOT]: Bump virtualenv from 20.21.1 to 20.24.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#301 - [DEPENDABOT]: Bump virtualenv from 20.21.1 to 20.24.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#300 - [DEPENDABOT]: Bump actions/checkout from 3.0.2 to 4.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#299 - ValueError: cannot assign slice from input of different size

Issue - State: closed - Opened by LouisK92 over 1 year ago
Labels: bug

#298 - Feature Request Summary

Issue - State: closed - Opened by StanislavBratchikov over 1 year ago - 1 comment
Labels: enhancement

#297 - [DEPENDABOT]: Bump leidenalg from 0.8.10 to 0.10.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#296 - [DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.0.1 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#295 - [DEPENDABOT]: Bump scikit-learn from 1.0.2 to 1.3.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#294 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.5.1 to 1.8.10

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#293 - [DEPENDABOT]: Bump actions/checkout from 3.0.2 to 3.6.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#292 - [DEPENDABOT]: Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

GitHub / theislab/spapros issues and pull requests