Ecosyste.ms: Issues

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GitHub / theislab/dca issues and pull requests

#70 - Updates to work with TF 2.4. Added Docker Image

Pull Request - State: closed - Opened by rahul-ohlan 4 months ago - 1 comment

#69 - a question

Issue - State: open - Opened by 11051911 8 months ago - 1 comment

#68 - tensorflow.python.framework.errors_impl

Issue - State: open - Opened by htvh 10 months ago

#66 - Messed up dca installation

Issue - State: open - Opened by Rohit-Satyam 12 months ago - 1 comment

#65 - Download time out

Issue - State: open - Opened by WenzhuoTang about 1 year ago

#63 - pi.tsv is missing

Issue - State: open - Opened by MakikoJuan over 1 year ago

#62 - Denoising scRNA-seq using DCA can not work

Issue - State: open - Opened by peibana over 1 year ago

#61 - DCA vs scVI

Issue - State: open - Opened by HuynhNPT over 1 year ago

#60 - package versions

Issue - State: open - Opened by bxxu over 1 year ago

#59 - Bump tensorflow requirement to <=2.10

Pull Request - State: open - Opened by scottgigante-immunai over 1 year ago - 2 comments

#58 - dca îs not a package

Issue - State: open - Opened by dr-sayyadhury over 1 year ago

#57 - small error

Issue - State: closed - Opened by crawlerWPS over 1 year ago

#56 - pytorch version

Issue - State: open - Opened by GlancerZ almost 2 years ago

#55 - Which keras version to use?

Issue - State: open - Opened by Nayrouz109 almost 2 years ago - 1 comment

#54 - TypeError: load() missing 1 required positional argument: 'Loader'

Issue - State: closed - Opened by sruthisrini almost 2 years ago - 1 comment

#53 - Mode 'full' does not return the correct latent representation

Issue - State: closed - Opened by valentinwust about 2 years ago - 1 comment

#52 - Some questions about DCA implementation

Issue - State: closed - Opened by HelloWorldLTY about 2 years ago - 2 comments

#51 - I found that the tutorial page is broken

Issue - State: open - Opened by HelloWorldLTY about 2 years ago

#50 - -- hyper (no output/empty output)

Issue - State: open - Opened by LouiLouis about 2 years ago

#48 - pip install : ModuleNotFoundError: No module named 'keras.objectives'

Issue - State: closed - Opened by AlexCalderwood almost 3 years ago - 6 comments

#47 - conda install failure

Issue - State: open - Opened by zhqu1148980644 almost 3 years ago - 1 comment

#46 - DCA optimizer KeyError

Issue - State: closed - Opened by marcglettig about 3 years ago - 11 comments

#45 - Switch to TF2-keras optimizers

Pull Request - State: closed - Opened by gokceneraslan about 3 years ago

#44 - Use count data as input but encounter assertion error

Issue - State: closed - Opened by elviswong1013 over 3 years ago - 1 comment

#43 - why KeyError: 'rmsprop'?

Issue - State: closed - Opened by ocean-debug over 3 years ago - 1 comment

#42 - ImportError: cannot import name 'stacked_violin'

Issue - State: closed - Opened by chenziyi over 3 years ago - 3 comments

#41 - Not compatible with Tensorflow v2+

Pull Request - State: closed - Opened by ersinpw almost 4 years ago - 1 comment

#40 - Not compatible with Tensorflow v2+

Pull Request - State: closed - Opened by ersinpw almost 4 years ago

#39 - Not compatible with Tensorflow v2+

Pull Request - State: closed - Opened by ersinpw almost 4 years ago

#38 - Dependency on deprecated tensorflow function

Issue - State: closed - Opened by Yolanda-HT about 4 years ago - 1 comment

#37 - Value error while running dca with scanpy

Issue - State: closed - Opened by Yolanda-HT about 4 years ago

#36 - Version of Pandas

Issue - State: closed - Opened by gprashant17 about 4 years ago

#35 - smaller expression value after imputation?

Issue - State: open - Opened by chansigit about 4 years ago

#34 - denoisesubset option error

Issue - State: open - Opened by EliseAld over 4 years ago

#33 - Tensorflow version?

Issue - State: closed - Opened by alexQiSong over 4 years ago - 7 comments

#32 - conda installation error

Issue - State: open - Opened by cjhong over 4 years ago - 1 comment

#31 - there is a term tf.lgamma(y_true+1.0) in the NB loss function. Is it from NB pdf?

Issue - State: closed - Opened by jhu99 over 4 years ago - 1 comment

#30 - no 'mean_norm.tsv' created

Issue - State: open - Opened by royoelen almost 5 years ago - 1 comment

#28 - input and output dimensions

Issue - State: open - Opened by xikanfeng2 almost 5 years ago

#27 - Make the learning rate accessible from the API.

Pull Request - State: closed - Opened by gamazeps almost 5 years ago - 1 comment

#26 - pre trained model

Issue - State: open - Opened by fedeago about 5 years ago

#25 - cannot recognize fluidigm RNA-seq raw counts

Issue - State: closed - Opened by Winnie09 over 5 years ago - 3 comments

#24 - Input and Output

Issue - State: open - Opened by Winnie09 over 5 years ago

#23 - scale data

Issue - State: closed - Opened by wangjiawen2013 over 5 years ago - 3 comments

#22 - Error in running dca

Issue - State: closed - Opened by nhuhoa over 5 years ago - 1 comment

#21 - TypeError: Categorical is not ordered for operation max

Issue - State: open - Opened by bauerbach95 over 5 years ago - 1 comment

#20 - AssertionError: DCA claims adata does not contain counts

Issue - State: closed - Opened by LuckyMD over 5 years ago - 1 comment

#19 - Add conda installation documentation

Pull Request - State: closed - Opened by bebatut over 5 years ago - 1 comment

#18 - Installation via conda

Issue - State: closed - Opened by bebatut over 5 years ago - 1 comment

#17 - When using --hyper, no output matrix produced

Issue - State: open - Opened by LeahBriscoe over 5 years ago - 2 comments

#16 - Denoise and Latent mode / Poisson

Issue - State: open - Opened by yeuyeuh almost 6 years ago

#15 - Add option to set number of threads used

Pull Request - State: closed - Opened by timoast about 6 years ago - 3 comments

#14 - Error in running dca

Issue - State: closed - Opened by mkrzak about 6 years ago - 4 comments

#13 - inconsistent requrement

Issue - State: closed - Opened by moinfar about 6 years ago - 3 comments

#12 - fix "network_kwds" and "training_kwds"

Pull Request - State: closed - Opened by milescsmith about 6 years ago - 1 comment

#11 - --transpose/-t option

Issue - State: closed - Opened by radio1988 about 6 years ago - 1 comment

#10 - Normalization in mean_norm.tsv output

Issue - State: closed - Opened by ajrzepiela about 6 years ago - 1 comment

#9 - python version

Issue - State: closed - Opened by ajrzepiela about 6 years ago - 1 comment

#8 - 10x genomics h5 format for huge data

Issue - State: open - Opened by radio1988 about 6 years ago

#7 - csv.gz support

Issue - State: closed - Opened by radio1988 about 6 years ago - 2 comments

#6 - --hyper

Issue - State: closed - Opened by radio1988 about 6 years ago - 1 comment

#5 - Understanding SliceLayer and ColWiseMultLayer

Issue - State: open - Opened by mantisboxer about 6 years ago

#4 - Not able to run DCA from command line

Issue - State: closed - Opened by gufranca about 6 years ago - 4 comments

#3 - Output file description

Issue - State: closed - Opened by frenkiboy about 6 years ago - 1 comment

#2 - Install instructions use new repo name

Pull Request - State: closed - Opened by flying-sheep over 6 years ago - 1 comment

#1 - autoencoder.api.autoencode doesn't work

Issue - State: closed - Opened by jacksonloper over 6 years ago - 3 comments