Ecosyste.ms: Issues

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GitHub / tgbugs/pyontutils issues and pull requests

#100 - ttlfmt does not protect parentheses when formatting

Issue - State: closed - Opened by ioggstream over 2 years ago - 2 comments

#99 - neurondm/modles/nerves.py change source sheet

Issue - State: closed - Opened by tgbugs over 2 years ago - 1 comment

#98 - sheets should warn more loudly on duplicate columns

Issue - State: open - Opened by tgbugs over 2 years ago

#97 - scigraph load duplicates graph build directory

Issue - State: open - Opened by tgbugs over 2 years ago

#96 - Fix typo.

Pull Request - State: closed - Opened by dbrnz almost 3 years ago - 1 comment

#95 - broken documentation link http://ontology.doc/pyontutils/docstrings.html

Issue - State: closed - Opened by cknoll almost 3 years ago - 5 comments

#94 - Sql Upgrade

Pull Request - State: open - Opened by tmsincomb over 3 years ago - 1 comment

#93 - npo entailed phenotypes -> subclasses

Issue - State: open - Opened by tgbugs almost 4 years ago

#92 - Merging some pythonutils parts up to RDFlib

Issue - State: open - Opened by nicholascar about 4 years ago - 11 comments

#91 - pax-spine pull request for the pull request

Pull Request - State: open - Opened by tmsincomb about 4 years ago - 1 comment

#90 - Ontload for burak

Pull Request - State: open - Opened by tmsincomb over 4 years ago - 1 comment

#89 - fix duplication of expression phenotype and neurotransmitter phenotype

Issue - State: open - Opened by tgbugs over 4 years ago
Labels: neurondm

#88 - sheets.Sheet.update fails if target sheet is empty

Issue - State: open - Opened by tgbugs over 4 years ago

#87 - stale curie map issue

Issue - State: open - Opened by tgbugs over 4 years ago

#85 - clifun args and defaults are backwards

Issue - State: open - Opened by tgbugs over 4 years ago - 1 comment

#84 - ttlser longer prefix issue

Issue - State: open - Opened by tgbugs over 4 years ago - 1 comment

#82 - figure out how to sanely set ontology local repo at runtime

Issue - State: open - Opened by tgbugs over 4 years ago

#81 - ttlser sporadic determinism failures

Issue - State: closed - Opened by tgbugs almost 5 years ago

#80 - hierarchies should allow collapse for all duplicates

Issue - State: closed - Opened by tgbugs almost 5 years ago - 1 comment

#79 - devconfig

Pull Request - State: closed - Opened by tmsincomb about 5 years ago

#78 - nest asnyc move

Pull Request - State: closed - Opened by tmsincomb about 5 years ago

#77 - graphloading issue

Issue - State: open - Opened by tgbugs over 5 years ago

#76 - shebang update 3.6 -> 3.7

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#75 - Sparc Tree View Update

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#74 - Changed some of the labels in the table

Pull Request - State: closed - Opened by memartone over 5 years ago

#73 - url update

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#72 - sawg update for broken links

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#71 - ontree and source sparc_terms-mod update

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#70 - Sparc View

Pull Request - State: closed - Opened by tmsincomb over 5 years ago - 2 comments

#69 - This is just a test to see if I can get an image to display

Issue - State: closed - Opened by memartone over 5 years ago - 1 comment

#68 - part of my changes

Pull Request - State: closed - Opened by MCSZ over 5 years ago

#67 - neurondm compiled location

Issue - State: open - Opened by tgbugs over 5 years ago - 1 comment

#66 - ilxutils diff does not detect whitespace changes

Issue - State: open - Opened by tgbugs over 5 years ago

#65 - ttlser major inconsistency when serializing apinat graphs

Issue - State: open - Opened by tgbugs over 5 years ago

#64 - sparc queries to spreadsheets

Issue - State: open - Opened by tgbugs over 5 years ago - 3 comments

#63 - devconfig.write called via ontutils devconfig doesn't save hypothesis_api_user

Issue - State: closed - Opened by tgbugs over 5 years ago - 1 comment

#62 - Two neuropeptide Y

Issue - State: open - Opened by memartone over 5 years ago

#61 - Neurofilament mRNA

Issue - State: open - Opened by memartone over 5 years ago

#60 - Duplicate cholecysokinin

Issue - State: open - Opened by memartone over 5 years ago

#59 - Why are genes classified under sequence feature

Issue - State: closed - Opened by memartone over 5 years ago - 4 comments

#58 - Cell Morphological Quality vs Phenotype

Issue - State: closed - Opened by memartone over 5 years ago - 1 comment

#57 - Erroneus class definition

Issue - State: closed - Opened by memartone over 5 years ago - 3 comments

#56 - neurondm labels for logical phenotypes

Issue - State: open - Opened by tgbugs over 5 years ago

#55 - scigraph client restService.__del__ called multiple times

Issue - State: open - Opened by tgbugs over 5 years ago

#54 - organization, meta, & speed boost

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#53 - Update ontree.py

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#52 - Hierarchy fix & view.txt documentation

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#51 - general ilxutils update & SPARC extension

Pull Request - State: closed - Opened by tmsincomb over 5 years ago

#50 - Olfactory cells are classified as reticular cells

Issue - State: open - Opened by memartone almost 6 years ago

#49 - Why only one intrinsic neuron?

Issue - State: closed - Opened by memartone almost 6 years ago

#48 - Martinotti cell-problems classifying

Issue - State: closed - Opened by memartone almost 6 years ago - 4 comments

#47 - Projecting to nucleus of the diagonal band neuron

Issue - State: closed - Opened by memartone almost 6 years ago - 1 comment

#46 - Classification error

Issue - State: closed - Opened by memartone almost 6 years ago - 1 comment

#45 - Duplicate class

Issue - State: closed - Opened by memartone almost 6 years ago - 1 comment

#44 - Vestibular nuclei cells are missing from the CUTs. Please add.

Issue - State: open - Opened by memartone almost 6 years ago - 2 comments

#43 - rdfs:label "Striatum GABAergic interneuron"

Issue - State: closed - Opened by memartone almost 6 years ago - 1 comment

#41 - CUT Martinotti cell

Issue - State: closed - Opened by memartone almost 6 years ago - 1 comment

#40 - reorganization

Pull Request - State: closed - Opened by tgbugs almost 6 years ago - 1 comment

#39 - All changes to ilxutils except berman.py

Pull Request - State: closed - Opened by tmsincomb almost 6 years ago - 1 comment

#38 - ontree flatten 500 errror

Issue - State: closed - Opened by tgbugs almost 6 years ago - 1 comment

#37 - scigraph_client Annotation.annotationPost bad return type

Issue - State: open - Opened by tgbugs about 6 years ago

#36 - extracting_pmids_from_neurolex.py update

Pull Request - State: closed - Opened by tmsincomb about 6 years ago

#35 - ontree missing rdfs:subPropertyOf -> subPropertyOf translation

Issue - State: closed - Opened by tgbugs over 6 years ago

#34 - decouple external resource dependent code

Issue - State: open - Opened by tgbugs over 6 years ago - 3 comments

#33 - move Ont Class, etc to their own file

Issue - State: open - Opened by tgbugs over 6 years ago - 1 comment

#32 - bad link to interlex on http://ontology.neuinfo.org/docs/NIF-Ontology/README.html

Issue - State: closed - Opened by tgbugs over 6 years ago - 1 comment
Labels: docs

#31 - joblib 0.12.2 unpickling issues

Issue - State: closed - Opened by tgbugs over 6 years ago - 1 comment

#30 - break allen cell types into two files and follow the pattern from huang2017

Issue - State: closed - Opened by tgbugs over 6 years ago - 5 comments

#29 - cli and cli_test.py

Pull Request - State: closed - Opened by tmsincomb over 6 years ago - 1 comment

#28 - ontload fails silently on pull if --force was used

Issue - State: open - Opened by tgbugs over 6 years ago

#26 - switch neurons graphBase/Config to use Ont

Issue - State: closed - Opened by tgbugs over 6 years ago - 1 comment

#25 - ttlser reordring of lists breaks propertyChainAxiom

Issue - State: closed - Opened by tgbugs over 6 years ago

#24 - ontload remove debug.log files from zip

Issue - State: open - Opened by tgbugs over 6 years ago

#23 - Updating ilxutils

Pull Request - State: closed - Opened by tmsincomb over 6 years ago - 3 comments

#22 - hierarchies dematerialization issues

Issue - State: open - Opened by tgbugs almost 7 years ago

#21 - Got a ModuleNotFoundError for 'pyontutils' when using NeuronLangExample.ipynb

Issue - State: closed - Opened by MFSY almost 7 years ago - 2 comments

#20 - fix typos

Pull Request - State: closed - Opened by katrinleinweber almost 7 years ago - 2 comments

#19 - ttlser add tests for XMLLiteral serialization determinism

Issue - State: open - Opened by tgbugs about 7 years ago

#18 - consolidate various tools into a basic utilties script

Issue - State: open - Opened by tgbugs over 7 years ago

#17 - scigraph_client needs to fail loudly on auth

Issue - State: closed - Opened by tgbugs over 7 years ago

#16 - ttlser fails if a literal is a subject

Issue - State: closed - Opened by tgbugs over 7 years ago - 2 comments

#14 - slimgen ncbigene definedForTaxon improper modelling

Issue - State: open - Opened by tgbugs over 7 years ago

#13 - ttlser determinism fails when OWLAPI reparents disjointness axioms

Issue - State: open - Opened by tgbugs over 7 years ago - 3 comments

#12 - scig fails on pipe

Issue - State: closed - Opened by tgbugs over 7 years ago - 1 comment

#11 - Update paxinos09names.txt

Pull Request - State: closed - Opened by christian-oreilly over 7 years ago

#10 - ttlser fails to deterministically serialize owl:Axiom entries

Issue - State: closed - Opened by tgbugs over 7 years ago - 1 comment

#9 - ttlser serializes shortened ontology iris

Issue - State: open - Opened by tgbugs over 7 years ago

#8 - ttlser.py still not actually deterministic

Issue - State: closed - Opened by tgbugs about 8 years ago - 2 comments

#7 - scr_sync.py using bad identifier for university

Issue - State: open - Opened by tgbugs over 8 years ago

#5 - scigraph_client bug in Graph.getEdges

Issue - State: closed - Opened by tgbugs over 8 years ago - 1 comment

#4 - scigraph_client should return empty list instead of None on 404

Issue - State: closed - Opened by tgbugs almost 9 years ago

#3 - scigraph_client add cache=True option to enable local caching

Issue - State: closed - Opened by tgbugs almost 9 years ago