Ecosyste.ms: Issues

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GitHub / teamtomo/yet-another-imod-wrapper issues and pull requests

#40 - Resolved ambiguity in fetching tilt axis angle from .xf file

Pull Request - State: closed - Opened by rdrighetto about 2 months ago - 8 comments

#40 - Resolved ambiguity in fetching tilt axis angle from .xf file

Pull Request - State: closed - Opened by rdrighetto about 2 months ago - 10 comments

#39 - change source of angle offset in align.log file

Pull Request - State: closed - Opened by alisterburt about 1 year ago

#39 - change source of angle offset in align.log file

Pull Request - State: closed - Opened by alisterburt about 1 year ago

#38 - update wording in docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#38 - update wording in docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#37 - try to fix deployment

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#37 - try to fix deployment

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#36 - fix site description and repo name

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#36 - fix site description and repo name

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#35 - fix pypi deployment

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#35 - fix pypi deployment

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#34 - simplify usage in readme by referencing docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#34 - simplify usage in readme by referencing docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#33 - fix docs formatting on homepage

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#33 - fix docs formatting on homepage

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#32 - update test matrix and classifiers to include python 3.11

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#32 - update test matrix and classifiers to include python 3.11

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#31 - reference imodmodel in docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#31 - reference imodmodel in docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#30 - fix docs deployment

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#30 - fix docs deployment

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#29 - First pass on some docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#29 - First pass on some docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#28 - GHIFS

Issue - State: open - Opened by alisterburt about 2 years ago

#28 - GHIFS

Issue - State: open - Opened by alisterburt about 2 years ago

#27 - add and expose command line interface

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#27 - add and expose command line interface

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#26 - fix description

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#26 - fix description

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#25 - move to pyproject.toml and src layout

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#25 - move to pyproject.toml and src layout

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#24 - Try except for error

Pull Request - State: closed - Opened by EuanPyle about 2 years ago

#24 - Try except for error

Pull Request - State: closed - Opened by EuanPyle about 2 years ago

#23 - make XF handler deal with multiple solutions

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#23 - make XF handler deal with multiple solutions

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#22 - Add util func for getting input rotation angle from align.log file

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#22 - Add util func for getting input rotation angle from align.log file

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#21 - add test for getting tilt angle offset

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#21 - add test for getting tilt angle offset

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#19 - Add skip if completed ala lil_aretomo

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#19 - Add skip if completed ala lil_aretomo

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#18 - Etomo output update and silence BRT execution

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#18 - Etomo output update and silence BRT execution

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#17 - EtomoDirectoryHandler -> EtomoOutput

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#16 - Revert "don't do surface fitting during tiltalign"

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#15 - fix setup mrcfile v

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 2 comments

#14 - don't do surface fitting during tiltalign

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#13 - move etomo directory handler into etomo utils

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#12 - Coerce output directory argument to pathlib.Path

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#11 - Return `EtomoDirectory` from alignment functions

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#10 - add classmethod for construction of xf handler from file

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#9 - add io utils and xf handler

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#8 - Add basic README

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#7 - define patch size for patch tracking in angstroms

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#6 - Move to 'pure python' API + internal refactor

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#5 - make write adoc import relative

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#4 - simplify version checking logic

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#3 - Error messages for incorrect IMOD version

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 2 comments

#2 - simplify installation check

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#1 - IMOD not found if version == 4.9.0

Issue - State: closed - Opened by EuanPyle over 2 years ago - 2 comments