teamtomo/starfile issues and pull requests

#80 - Fix writing starfile

Pull Request - State: closed - Opened by hanjinliu 15 days ago - 7 comments

#79 - Unnecessary lines with starfile=0.5.10

Issue - State: closed - Opened by hanjinliu 16 days ago - 9 comments

#77 - relax requirements on writing speed test

Pull Request - State: closed - Opened by alisterburt 2 months ago - 1 comment

#72 - starfile.write ignores overwrite=True argument in the newest versions

Issue - State: open - Opened by rsanchezgarc 3 months ago - 4 comments
Labels: good first issue

#71 - fixed issue in parser when trying to parse empty loop blocks

Pull Request - State: closed - Opened by andschenk 3 months ago - 3 comments

#70 - starfile.read fails when parsing empy loop blocks

Issue - State: closed - Opened by andschenk 3 months ago - 2 comments

#69 - Fix NaN parsing

Pull Request - State: closed - Opened by jojoelfe 3 months ago - 2 comments

#68 - NANs are not properly handled with newer pandas version

Issue - State: closed - Opened by rsanchezgarc 3 months ago - 3 comments

#67 - correct typo in multiple data block example

Pull Request - State: closed - Opened by huwjenkins 4 months ago - 2 comments

#66 - [test-bot] pip install --pre is failing

Issue - State: open - Opened by github-actions[bot] 5 months ago
Labels: bug

#65 - Add option to omit field numbers

Pull Request - State: closed - Opened by sjrothfuss 6 months ago - 15 comments

#64 - Update docs

Pull Request - State: closed - Opened by jojoelfe 6 months ago - 1 comment

#63 - Document new `to_string` function

Issue - State: closed - Opened by jojoelfe 6 months ago - 4 comments

#62 - `StarWriter.lines`

Pull Request - State: closed - Opened by jahooker 6 months ago - 9 comments

#61 - Starfile write fails

Issue - State: closed - Opened by lglass 8 months ago - 3 comments

#60 - explicitly clear linecache cache once parsing is finished

Pull Request - State: closed - Opened by alisterburt 8 months ago

#59 - starfile.read Doesn't Recognize File Changes

Issue - State: closed - Opened by sjrothfuss 8 months ago - 3 comments

#58 - Update backup file

Pull Request - State: closed - Opened by hanjinliu 9 months ago - 2 comments

#57 - ci(dependabot): bump peaceiris/actions-gh-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#56 - Use Polars to read and write rather than Pandas

Pull Request - State: open - Opened by d-j-hatton 10 months ago - 4 comments

#55 - paginated access to file contents

Issue - State: open - Opened by alisterburt 10 months ago - 2 comments
Labels: enhancement

#54 - ci(dependabot): bump softprops/action-gh-release from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#53 - Fix pandas FutureWarnings

Pull Request - State: closed - Opened by jojoelfe 11 months ago - 2 comments

#52 - Read specific columns as str

Pull Request - State: closed - Opened by EuanPyle 12 months ago - 4 comments

#51 - fix warnings in tests

Pull Request - State: closed - Opened by alisterburt 12 months ago - 3 comments

#50 - Read rlnTomoName as str

Pull Request - State: closed - Opened by EuanPyle 12 months ago - 2 comments

#49 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#48 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#47 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#46 - ci(dependabot): bump actions/setup-python from 3 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#45 - ci(dependabot): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#44 - tests failing during collection on 3.12

Issue - State: open - Opened by alisterburt about 1 year ago - 4 comments

#43 - move to pyproject.toml based setup

Pull Request - State: closed - Opened by alisterburt about 1 year ago - 1 comment

#42 - Updated df.applymap to df.map to silence FutureWarning

Pull Request - State: closed - Opened by ray-berkeley about 1 year ago - 7 comments

#41 - Improved string quoting

Pull Request - State: closed - Opened by jojoelfe about 1 year ago - 2 comments

#40 - Remove deprecated pkg_resources

Pull Request - State: closed - Opened by BradyAJohnston about 1 year ago - 3 comments

#39 - pkg_resources DeprecationWarning

Issue - State: closed - Opened by BradyAJohnston about 1 year ago - 1 comment

#38 - Update readme/docs with new changes and fix cli bug

Pull Request - State: closed - Opened by brisvag over 1 year ago

#37 - string value columns are converted to number vlues

Issue - State: closed - Opened by logicvay2010 over 1 year ago - 7 comments

#36 - Use new data model differentiating single line loop blocks from simple blocks

Pull Request - State: closed - Opened by alisterburt over 1 year ago - 1 comment

#35 - String quoting

Issue - State: closed - Opened by jojoelfe over 1 year ago - 2 comments

#34 - Return empty dataframe when reading an empty table

Pull Request - State: closed - Opened by quantumjot almost 2 years ago

#33 - minor docs fixes

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#32 - initial docs

Pull Request - State: closed - Opened by alisterburt about 2 years ago

#31 - github issue filesystem

Issue - State: open - Opened by alisterburt about 2 years ago

#30 - how to read two-block starfile and get access to second block specifically

Issue - State: closed - Opened by bingwang14 almost 3 years ago - 3 comments

#29 - update pypi classifiers to reflect minreq python 3.8

Pull Request - State: closed - Opened by alisterburt about 3 years ago

#28 - README.md not up to date with library

Issue - State: closed - Opened by samuelhaysom about 3 years ago - 3 comments

#27 - Check linecache on `TextCrawler` instantiation

Pull Request - State: closed - Opened by alisterburt about 3 years ago

#26 - Switch default value of force_loop to True

Pull Request - State: closed - Opened by Guillawme about 3 years ago

#25 - Optics block reformatted

Issue - State: closed - Opened by ryanfeathers about 3 years ago - 13 comments