teamtomo/membrain-seg issues and pull requests

#37 - Ported deconvolution code to CuPy

Pull Request - State: closed - Opened by rdrighetto over 1 year ago - 3 comments

#37 - Ported deconvolution code to CuPy

Pull Request - State: closed - Opened by rdrighetto over 1 year ago - 3 comments

#36 - Misc features

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#36 - Misc features

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#35 - documentation typos

Issue - State: closed - Opened by 3P1L over 1 year ago - 1 comment

#35 - documentation typos

Issue - State: closed - Opened by 3P1L over 1 year ago - 1 comment

#34 - ci(dependabot): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#33 - Training from scratch: 3D Coordinates

Issue - State: closed - Opened by virlyananda over 1 year ago - 2 comments

#32 - Deconvolution as a preprocessing option

Pull Request - State: closed - Opened by rdrighetto over 1 year ago - 4 comments

#31 - Header issues

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#30 - Feature Suggestion: Add CLI flag to turn off test_time_augmentation

Issue - State: closed - Opened by MSiggel over 1 year ago - 2 comments

#29 - Adjust compatibility for ColabSeg

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#28 - Fix dataloading issues

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#27 - Error during normalization while running membrain on WSL2

Issue - State: closed - Opened by BhattaArjun2p over 1 year ago - 7 comments

#26 - Feature suggestion: skeletonization of output segmentation

Issue - State: open - Opened by LorenzLamm over 1 year ago - 3 comments

#25 - Connected components

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#24 - Feature suggestion: adjustable thresholding

Issue - State: closed - Opened by bbarad over 1 year ago - 9 comments

#23 - remove flags from tomogram loading

Issue - State: closed - Opened by LorenzLamm over 1 year ago - 1 comment

#22 - Pyto tomoloading

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#21 - Pyto tomoloading

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#20 - Implement mixed precision for training and inference

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#19 - Restructure packages

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#18 - pip install . is not installting tomo_processing module

Issue - State: closed - Opened by truatpasteurdotfr over 1 year ago - 2 comments

#17 - Training documentation

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#16 - Images for documentation

Issue - State: open - Opened by LorenzLamm over 1 year ago - 6 comments

#15 - Add screenshots to documentation

Issue - State: closed - Opened by LorenzLamm over 1 year ago - 1 comment

#14 - Training docs

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago - 1 comment

#13 - ci(dependabot): bump actions/setup-python from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#12 - Explanation of Amplitude Spectrum CSV Format

Issue - State: open - Opened by LorenzLamm over 1 year ago

#11 - Add docs and CLI

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#10 - Add Typer CLI and documentation

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago

#9 - docs template

Pull Request - State: closed - Opened by alisterburt over 1 year ago

#8 - Preprocessing

Pull Request - State: closed - Opened by LorenzLamm over 1 year ago - 3 comments

#7 - Convert print statements to logging

Issue - State: open - Opened by kevinyamauchi almost 2 years ago

#6 - Add docstrings

Issue - State: closed - Opened by kevinyamauchi almost 2 years ago - 1 comment
Labels: documentation

#5 - Add dependencies for segment.py

Pull Request - State: closed - Opened by bbarad almost 2 years ago - 1 comment

#4 - Training adjustments

Pull Request - State: closed - Opened by LorenzLamm almost 2 years ago - 1 comment

#3 - fix indentation

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago

#2 - improve logging on Unet

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago - 2 comments

#1 - Add UNet

Pull Request - State: closed - Opened by kevinyamauchi almost 2 years ago - 3 comments

GitHub / teamtomo/membrain-seg issues and pull requests