teamtomo/membrain-seg issues and pull requests

#89 - add link to google colab notebook

Pull Request - State: closed - Opened by LorenzLamm 9 days ago - 1 comment

#88 - filter mrcfile loading warnings

Pull Request - State: closed - Opened by LorenzLamm 11 days ago - 1 comment

#87 - Logging statements

Pull Request - State: closed - Opened by LorenzLamm 11 days ago - 1 comment

#86 - Benchmark metrics

Pull Request - State: closed - Opened by LorenzLamm 11 days ago - 1 comment

#85 - On the fly data loading during training

Pull Request - State: closed - Opened by LorenzLamm 4 months ago

#85 - On the fly data loading during training

Pull Request - State: closed - Opened by LorenzLamm 4 months ago

#84 - draw random crop from each patch

Pull Request - State: closed - Opened by LorenzLamm 4 months ago

#84 - draw random crop from each patch

Pull Request - State: closed - Opened by LorenzLamm 4 months ago

#83 - Modify finetune function (#69)

Pull Request - State: closed - Opened by LorenzLamm 4 months ago - 1 comment

#83 - Modify finetune function (#69)

Pull Request - State: closed - Opened by LorenzLamm 4 months ago - 1 comment

#82 - Skeletonization Pixel Size Issue

Issue - State: open - Opened by congarr 4 months ago - 1 comment

#82 - Skeletonization Pixel Size Issue

Issue - State: open - Opened by congarr 4 months ago - 1 comment

#81 - Minor document update needed

Issue - State: open - Opened by kimdn 5 months ago

#81 - Minor document update needed

Issue - State: open - Opened by kimdn 5 months ago

#80 - Thresholds input file specification needs fix

Issue - State: closed - Opened by kimdn 5 months ago - 2 comments

#80 - Thresholds input file specification needs fix

Issue - State: closed - Opened by kimdn 5 months ago - 2 comments

#79 - update docs links

Pull Request - State: closed - Opened by LorenzLamm 6 months ago

#79 - update docs links

Pull Request - State: closed - Opened by LorenzLamm 6 months ago

#78 - MemBrain-seg installation documentation problem

Issue - State: closed - Opened by TomCrey 6 months ago - 2 comments

#78 - MemBrain-seg installation documentation problem

Issue - State: closed - Opened by TomCrey 6 months ago - 2 comments

#77 - fix tuple error

Pull Request - State: closed - Opened by LorenzLamm 6 months ago

#77 - fix tuple error

Pull Request - State: closed - Opened by LorenzLamm 6 months ago

#76 - [WIP] match pixel size in sliding window on GPU

Pull Request - State: open - Opened by LorenzLamm 7 months ago - 12 comments

#76 - [WIP] match pixel size in sliding window on GPU

Pull Request - State: open - Opened by LorenzLamm 7 months ago - 12 comments

#75 - Update docs

Pull Request - State: closed - Opened by LorenzLamm 7 months ago

#75 - Update docs

Pull Request - State: closed - Opened by LorenzLamm 7 months ago

#74 - Update docs

Pull Request - State: closed - Opened by LorenzLamm 7 months ago

#74 - Update docs

Pull Request - State: closed - Opened by LorenzLamm 7 months ago

#73 - Update cli.py example segment command

Pull Request - State: closed - Opened by GenevieveBuckley 7 months ago - 2 comments

#73 - Update cli.py example segment command

Pull Request - State: closed - Opened by GenevieveBuckley 7 months ago - 2 comments

#72 - fix numpy < 2.0.0

Pull Request - State: closed - Opened by LorenzLamm 7 months ago - 3 comments

#72 - fix numpy < 2.0.0

Pull Request - State: closed - Opened by LorenzLamm 7 months ago - 3 comments

#71 - "Why does an assignment issue occur after the installation is complete?"

Issue - State: closed - Opened by xingxingjiukunkun 7 months ago - 2 comments

#71 - "Why does an assignment issue occur after the installation is complete?"

Issue - State: closed - Opened by xingxingjiukunkun 7 months ago - 2 comments

#70 - Error on membrain launch after following installation guide

Issue - State: closed - Opened by GenevieveBuckley 7 months ago - 6 comments

#70 - Error on membrain launch after following installation guide

Issue - State: closed - Opened by GenevieveBuckley 7 months ago - 6 comments

#69 - Modify finetune function

Pull Request - State: closed - Opened by Hanyi11 8 months ago

#69 - Modify finetune function

Pull Request - State: closed - Opened by Hanyi11 8 months ago

#68 - Add finetune function

Pull Request - State: closed - Opened by Hanyi11 8 months ago - 1 comment

#68 - Add finetune function

Pull Request - State: closed - Opened by Hanyi11 8 months ago - 1 comment

#67 - Accelerating inference performance with torch.compile

Issue - State: open - Opened by saugatkandel 9 months ago

#67 - Accelerating inference performance with torch.compile

Issue - State: open - Opened by saugatkandel 9 months ago

#66 - ci(dependabot): bump peaceiris/actions-gh-pages from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#66 - ci(dependabot): bump peaceiris/actions-gh-pages from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#65 - add skeletonization code

Pull Request - State: closed - Opened by Hanyi11 10 months ago - 2 comments

#65 - add skeletonization code

Pull Request - State: closed - Opened by Hanyi11 10 months ago - 2 comments

#64 - On the fly rescaling (GPU)

Pull Request - State: closed - Opened by LorenzLamm 10 months ago - 3 comments

#64 - On the fly rescaling (GPU)

Pull Request - State: closed - Opened by LorenzLamm 10 months ago - 3 comments

#63 - ci(dependabot): bump softprops/action-gh-release from 1 to 2

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#63 - ci(dependabot): bump softprops/action-gh-release from 1 to 2

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#62 - nan in the training loss

Issue - State: open - Opened by Hanyi11 11 months ago

#62 - nan in the training loss

Issue - State: open - Opened by Hanyi11 11 months ago

#61 - add link to readme file

Pull Request - State: closed - Opened by LorenzLamm 11 months ago

#61 - add link to readme file

Pull Request - State: closed - Opened by LorenzLamm 11 months ago

#60 - installation instructions outdated in docs

Issue - State: open - Opened by alisterburt 12 months ago

#60 - installation instructions outdated in docs

Issue - State: open - Opened by alisterburt 12 months ago

#59 - fix docs deployment and get rid of warning during docs build

Pull Request - State: closed - Opened by alisterburt 12 months ago

#59 - fix docs deployment and get rid of warning during docs build

Pull Request - State: closed - Opened by alisterburt 12 months ago

#58 - moving to package independent of membrain

Issue - State: open - Opened by alisterburt 12 months ago - 10 comments
Labels: meta

#58 - moving to package independent of membrain

Issue - State: open - Opened by alisterburt 12 months ago - 10 comments
Labels: meta

#57 - docs setup with mkdocs-material

Issue - State: closed - Opened by alisterburt 12 months ago - 6 comments

#57 - docs setup with mkdocs-material

Issue - State: closed - Opened by alisterburt 12 months ago - 6 comments

#56 - simple python API

Issue - State: open - Opened by alisterburt 12 months ago - 1 comment

#56 - simple python API

Issue - State: open - Opened by alisterburt 12 months ago - 1 comment

#55 - on-the-fly preprocessing

Issue - State: open - Opened by alisterburt 12 months ago - 13 comments

#55 - on-the-fly preprocessing

Issue - State: open - Opened by alisterburt 12 months ago - 13 comments

#54 - Opening up the training data

Issue - State: open - Opened by alisterburt 12 months ago - 2 comments

#54 - Opening up the training data

Issue - State: open - Opened by alisterburt 12 months ago - 2 comments

#53 - usage in multi-user environments -> automated weights download

Issue - State: open - Opened by alisterburt 12 months ago - 20 comments

#53 - usage in multi-user environments -> automated weights download

Issue - State: open - Opened by alisterburt 12 months ago - 20 comments

#52 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#52 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#51 - ci(dependabot): bump styfle/cancel-workflow-action from 0.12.0 to 0.12.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#51 - ci(dependabot): bump styfle/cancel-workflow-action from 0.12.0 to 0.12.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#50 - ci(dependabot): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#50 - ci(dependabot): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#49 - Out of memory killed problem in Ubuntu

Issue - State: open - Opened by forxhunter about 1 year ago