teamtomo/lil-aretomo issues and pull requests

#43 - add executable parameter

Pull Request - State: closed - Opened by ThomasHoffmann77 8 months ago - 1 comment

#43 - add executable parameter

Pull Request - State: closed - Opened by ThomasHoffmann77 8 months ago - 1 comment

#42 - generalise parsing logic to also work for AreTomo v1.3.0 files

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#42 - generalise parsing logic to also work for AreTomo v1.3.0 files

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#41 - Add compatibility for AreTomo v1.3.0 aln files

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 2 comments

#41 - Add compatibility for AreTomo v1.3.0 aln files

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 2 comments

#40 - Fix writing mrc file bug

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#40 - Fix writing mrc file bug

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#39 - Add check for aln file, skip if exists

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 6 comments

#39 - Add check for aln file, skip if exists

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 6 comments

#38 - add example aln file

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#38 - add example aln file

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#37 - add pandas dependency

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#37 - add pandas dependency

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#36 - add output data structure

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#36 - add output data structure

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#35 - minor fix

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#35 - minor fix

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#34 - add aln file parser

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#34 - add aln file parser

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#33 - General refactor/simplification

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#33 - General refactor/simplification

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#32 - fix setup mrcfile

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#32 - fix setup mrcfile

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#31 - Import numpy as np

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 1 comment

#31 - Import numpy as np

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 1 comment

#30 - replace setup.py with declarative build config in pyproject.toml

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#30 - replace setup.py with declarative build config in pyproject.toml

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#29 - drop support for python <=3.7

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#29 - drop support for python <=3.7

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#28 - accept numpy arrays instead of mrc files

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#28 - accept numpy arrays instead of mrc files

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#27 - add comment explaining DarkTol argument

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#27 - add comment explaining DarkTol argument

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#26 - Add gpu

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 2 comments

#26 - Add gpu

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 2 comments

#25 - Explicit python

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#25 - Explicit python

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#24 - Add GPU ID functionality

Issue - State: closed - Opened by EuanPyle over 2 years ago

#24 - Add GPU ID functionality

Issue - State: closed - Opened by EuanPyle over 2 years ago

#23 - Convert rln input in A to unbinned pixels for Align_Z

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#23 - Convert rln input in A to unbinned pixels for Align_Z

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#22 - Change thickness for aligment input to angstroms to match rln

Issue - State: closed - Opened by EuanPyle over 2 years ago - 1 comment

#22 - Change thickness for aligment input to angstroms to match rln

Issue - State: closed - Opened by EuanPyle over 2 years ago - 1 comment

#21 - Tuple Fix

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#20 - Type hinting in lil_aretomo screws help in tomo_preprocessing

Issue - State: closed - Opened by shahpnmlab over 2 years ago - 9 comments

#19 - Add tiltcor

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#18 - DarkTol to 0.01 to avoid image removal

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#17 - tiny refactor 2

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#16 - tiny refactor

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#15 - fix command generation when AreTomo executable not provided

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#14 - prevent dark images from being removed

Issue - State: closed - Opened by alisterburt over 2 years ago - 2 comments

#13 - Added console to error message

Pull Request - State: closed - Opened by EuanPyle over 2 years ago

#12 - add stub test

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#11 - add pre-commit hooks

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#10 - minor refactor

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#9 - PR4

Pull Request - State: closed - Opened by EuanPyle over 2 years ago - 1 comment

#8 - README update

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#7 - add import to package init

Pull Request - State: closed - Opened by alisterburt over 2 years ago - 2 comments

#6 - add automatic testing & deployment (no tests yet)

Pull Request - State: closed - Opened by alisterburt over 2 years ago - 1 comment

#5 - add _version.py to gitignore and delete old file

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#4 - fix suffix bug

Pull Request - State: closed - Opened by alisterburt over 2 years ago - 3 comments

#3 - Allow defaulting to `AreTomo` on PATH

Pull Request - State: closed - Opened by alisterburt over 2 years ago

#2 - expose volZ

Issue - State: closed - Opened by alisterburt over 2 years ago - 5 comments

#1 - Minor API nitpicks

Issue - State: closed - Opened by alisterburt over 2 years ago - 1 comment

GitHub / teamtomo/lil-aretomo issues and pull requests