Ecosyste.ms: Issues

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GitHub / tcp-lab/mtp-db issues and pull requests

#46 - Bump certifi from 2022.12.7 to 2023.7.22 in /src

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#46 - Bump certifi from 2022.12.7 to 2023.7.22 in /src

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#45 - Make the Diseases and Function data more useful

Issue - State: closed - Opened by MrHedmad over 1 year ago - 2 comments
Labels: enhancement

#45 - Make the Diseases and Function data more useful

Issue - State: closed - Opened by MrHedmad over 1 year ago - 2 comments
Labels: enhancement

#43 - Add information from the GO to other tables

Issue - State: closed - Opened by MrHedmad over 1 year ago - 1 comment

#43 - Add information from the GO to other tables

Issue - State: closed - Opened by MrHedmad over 1 year ago - 1 comment

#42 - Misplaced ICT entries in some tables of the database

Issue - State: closed - Opened by Feat-FeAR over 1 year ago
Labels: bug

#42 - Misplaced ICT entries in some tables of the database

Issue - State: closed - Opened by Feat-FeAR over 1 year ago
Labels: bug

#41 - Big review of the MTP-DB

Pull Request - State: closed - Opened by MrHedmad over 1 year ago

#41 - Big review of the MTP-DB

Pull Request - State: closed - Opened by MrHedmad over 1 year ago

#40 - Bump certifi from 2022.9.24 to 2022.12.7 in /src

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#40 - Bump certifi from 2022.9.24 to 2022.12.7 in /src

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#39 - Add the Gene Onthology data to the MTP-DB

Pull Request - State: closed - Opened by MrHedmad over 1 year ago
Labels: bug

#39 - Add the Gene Onthology data to the MTP-DB

Pull Request - State: closed - Opened by MrHedmad over 1 year ago
Labels: bug

#38 - Bump requests from 2.28.1 to 2.31.0 in /src

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#38 - Bump requests from 2.28.1 to 2.31.0 in /src

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#37 - Might find indexes on tables useful

Issue - State: closed - Opened by PeterDarley almost 2 years ago - 3 comments
Labels: enhancement

#37 - Might find indexes on tables useful

Issue - State: closed - Opened by PeterDarley almost 2 years ago - 3 comments
Labels: enhancement

#36 - The release database file should have a fixed file name

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: enhancement

#36 - The release database file should have a fixed file name

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: enhancement

#35 - The 'all contributors' badge is on a different line in the README

Issue - State: closed - Opened by MrHedmad almost 2 years ago
Labels: enhancement, good first issue

#35 - The 'all contributors' badge is on a different line in the README

Issue - State: closed - Opened by MrHedmad almost 2 years ago
Labels: enhancement, good first issue

#34 - Many known Ca2+ ion channels are missing from the repository

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: bug

#34 - Many known Ca2+ ion channels are missing from the repository

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: bug

#32 - Add contributors using AllContributors

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 2 comments

#32 - Add contributors using AllContributors

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 2 comments

#31 - Milestone Tracking - Create an interface to the database

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: help wanted, tracking

#31 - Milestone Tracking - Create an interface to the database

Issue - State: open - Opened by MrHedmad almost 2 years ago
Labels: help wanted, tracking

#30 - Milestone Tracking - Test the Database

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: help wanted, tracking

#30 - Milestone Tracking - Test the Database

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: help wanted, tracking

#29 - Milestone Tracking - Release the Database

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: tracking

#29 - Milestone Tracking - Release the Database

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: tracking

#28 - Extracted Daedalus to be alone

Pull Request - State: closed - Opened by MrHedmad almost 2 years ago

#28 - Extracted Daedalus to be alone

Pull Request - State: closed - Opened by MrHedmad almost 2 years ago

#27 - The relative conductances in the channels table are broken

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#27 - The relative conductances in the channels table are broken

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#26 - Ion channels parser rewrite

Pull Request - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#26 - Ion channels parser rewrite

Pull Request - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#25 - The Top-down and Bottom-up geneset approaches should be swapped

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: enhancement

#24 - Docs

Pull Request - State: closed - Opened by MrHedmad almost 2 years ago

#23 - Download from Ensembl/BioMart is very slow

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 2 comments
Labels: enhancement

#22 - Major refactoring of Daedalus

Pull Request - State: closed - Opened by MrHedmad almost 2 years ago

#21 - Some Ion Channels are missing from the Channels table

Issue - State: closed - Opened by MrHedmad almost 2 years ago

#20 - Create a runner script to run the whole analysis

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: enhancement

#19 - GABA and Glutamate ionotropic receptors are not correctly annotated

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#18 - GSEA plotting graphs should become a runnable script

Issue - State: closed - Opened by MrHedmad almost 2 years ago

#17 - "Volume" gated Ion Channels might be different than stretch gated ICs

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: bug, enhancement, needs triage

#16 - The gating mechanism cols should be fused together

Issue - State: closed - Opened by MrHedmad almost 2 years ago

#15 - HGNC-appointed ligand gated ion channels are too few

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#13 - Ligand information is missing for ligand-gated channels

Issue - State: closed - Opened by Feat-FeAR almost 2 years ago - 3 comments
Labels: enhancement, needs triage

#12 - KCNK genes are incorrectly categorized as voltage-gated

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#11 - There is no CI test pipeline in place

Issue - State: closed - Opened by MrHedmad almost 2 years ago
Labels: enhancement

#10 - Stretch Gated Ion Channels are not populated

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment
Labels: bug, needs triage

#9 - Leakage Ion Channels are not explicitly listed

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 3 comments
Labels: bug

#8 - Define GSEA gene lists

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#7 - Normalize solute symbolic representations

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#6 - Validate SLC table solutes to remove the warnings

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 1 comment

#5 - Write a thesaurus for solute entries

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 2 comments

#4 - Mark gap junctions in the channels list

Issue - State: closed - Opened by MrHedmad almost 2 years ago - 2 comments
Labels: enhancement

#2 - The ABC transporters have no solutes/stoichiometry information

Issue - State: closed - Opened by MrHedmad about 2 years ago
Labels: enhancement, help wanted

#1 - The atp-driven transporters have no solutes/stoichiometry information

Issue - State: closed - Opened by MrHedmad about 2 years ago
Labels: enhancement, help wanted