tbepler/jprobe issues and pull requests

#57 - switch to java.util.Properties for config info

Issue - State: open - Opened by tbepler over 10 years ago

#56 - switch to Java's util.logging for logging

Issue - State: open - Opened by tbepler over 10 years ago

#55 - Import workspace into current workspace

Issue - State: open - Opened by tbepler over 10 years ago

#54 - Refactor JProbeGUI component addition method

Issue - State: open - Opened by tbepler over 10 years ago

#53 - Recent workspaces menu item

Issue - State: open - Opened by tbepler over 10 years ago

#52 - Data menu

Issue - State: open - Opened by tbepler over 10 years ago

#51 - Improve formatting of help messages on the command line

Issue - State: open - Opened by tbepler over 10 years ago

#50 - Restructure package hierarchy

Issue - State: open - Opened by tbepler over 10 years ago

#49 - Refactor chiptools functions and arguments resource files

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#48 - GUI Frame needs to set Platform handlers

Issue - State: open - Opened by tbepler over 10 years ago - 1 comment

#47 - Refactor static swing components to be lazily instantiated

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#46 - Refactor core to allow opening multiple workspaces at once

Issue - State: open - Opened by tbepler over 10 years ago

#45 - Change JFileChoosers to awt.FileDialog's for better consistency with mac os

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#44 - Investigate PeakFinder bug

Issue - State: closed - Opened by tbepler over 10 years ago - 2 comments

#43 - Catch Apple-Quit event on macs

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#42 - Report progress on command line with \r

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#41 - ProbeMutator kmer overlap parameter

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#40 - ProbeMutator and GappedKmer bug

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#39 - Improve serialization efficiency of Kmers

Issue - State: closed - Opened by tbepler over 10 years ago - 2 comments

#38 - ProbeMutator should try 2 simultaneous mutations if 1 is not sufficient to lower the score

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#37 - Finish implementing MutationProfiler

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#36 - Move autosave and startup workspace loading to GUI plugin

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#35 - New workspace option in the File menu

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#34 - GUI component to display notifications

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#33 - Core notifications for loading and saving

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#32 - Import/Export threads

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#31 - Save thread

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#30 - Function dialog panel spacing

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#29 - Add dispose() method to data interface

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#28 - Data naming

Issue - State: open - Opened by tbepler over 10 years ago

#27 - Data sequences class hierarchy

Issue - State: open - Opened by tbepler over 10 years ago

#26 - BindingProfile modifications

Issue - State: open - Opened by tbepler over 10 years ago

#25 - Negative probe generator

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#24 - AgilentFormatter

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#23 - 5 G or C mutating function

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#22 - Data table column widths

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#21 - PeakFilter

Issue - State: closed - Opened by tbepler over 10 years ago - 2 comments

#20 - ProbeFilter

Issue - State: closed - Opened by tbepler over 10 years ago - 5 comments

#19 - ProbeJoiner modifications

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#18 - ProbeMutator modifications

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#17 - PrimerArgument class

Issue - State: closed - Opened by tbepler over 10 years ago - 1 comment

#16 - Make jprobe reference config and log files through its location rather than the current directory

Issue - State: closed - Opened by tbepler almost 11 years ago - 1 comment

#15 - Finish adding support for reading 2bit genome format

Issue - State: open - Opened by tbepler almost 11 years ago

#14 - Allow optional args to be selected/deselected in the gui

Issue - State: closed - Opened by tbepler almost 11 years ago - 1 comment

#13 - Allow PeakSeqs to be generated from regions around peak summit

Issue - State: closed - Opened by tbepler almost 11 years ago - 1 comment

#12 - Make field editors give feedback when an entry is invalid

Issue - State: closed - Opened by tbepler about 11 years ago

#11 - New function object needs to be created for each execution

Issue - State: closed - Opened by tbepler about 11 years ago

#10 - Need an edit menu that can be customized depending on active component

Issue - State: open - Opened by tbepler about 11 years ago

#9 - Need data import/export support in the gui

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#8 - Make help and preferences menues/windows in the gui plugin

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#7 - Implement saving and loading the workspace

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#6 - DataTabs need to be closeable and renameable

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#5 - Create method in GUIFrame for popping up error messages

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#4 - Need a way to log events across plugins

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#3 - Make JSpinners not reset their display text when entry is invalid

Issue - State: closed - Opened by tbepler about 11 years ago

#2 - Config txt files for specifying some launch parameters

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

#1 - Better Column size allocation in DataViewer table

Issue - State: closed - Opened by tbepler about 11 years ago - 1 comment

GitHub / tbepler/jprobe issues and pull requests