taxoniq/taxoniq issues and pull requests

#25 - using nr/nt databases

Issue - State: open - Opened by aretchless 5 months ago

#24 - Taxoniq with local taxonomy

Issue - State: closed - Opened by fgvieira 9 months ago - 1 comment

#23 - Unvendor marisa-trie

Pull Request - State: closed - Opened by kislyuk 11 months ago

#22 - ref_viruses_rep_genomes extraction failure

Issue - State: open - Opened by kislyuk 11 months ago - 1 comment

#22 - ref_viruses_rep_genomes extraction failure

Issue - State: closed - Opened by kislyuk 11 months ago - 2 comments

#21 - pip install failed building wheel for taxoniq

Issue - State: closed - Opened by brmagalis about 1 year ago - 2 comments

#20 - NCBI taxonomy DB out of date

Issue - State: open - Opened by nwheeler443 over 1 year ago - 6 comments

#20 - NCBI taxonomy DB out of date

Issue - State: closed - Opened by nwheeler443 over 1 year ago - 7 comments

#19 - License file missing in tar.gz

Issue - State: open - Opened by marieBvr over 1 year ago

#19 - License file missing in tar.gz

Issue - State: closed - Opened by marieBvr over 1 year ago - 1 comment

#18 - I tried pip3 install taxoniq inside a docker image using snakemake and it displayed this error

Issue - State: closed - Opened by GuilhermeVCCdaSilva almost 2 years ago - 1 comment

#17 - Accession id not found

Issue - State: open - Opened by marieBvr about 2 years ago

#17 - Accession id not found

Issue - State: open - Opened by marieBvr about 2 years ago - 2 comments

#16 - Defining taxon with int or string of taxonomy ID gives different results

Issue - State: closed - Opened by DuncanSussfeld over 2 years ago - 1 comment

#16 - Defining taxon with int or string of taxonomy ID gives different results

Issue - State: closed - Opened by DuncanSussfeld over 2 years ago - 1 comment

#16 - Defining taxon with int or string of taxonomy ID gives different results

Issue - State: closed - Opened by DuncanSussfeld over 2 years ago - 1 comment

#15 - Raise extract length limit

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#15 - Raise extract length limit

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#14 - Unlimit wikipedia extracts

Issue - State: open - Opened by kislyuk over 3 years ago

#14 - Unlimit wikipedia extracts

Issue - State: open - Opened by kislyuk over 3 years ago

#14 - Unlimit wikipedia extracts

Issue - State: open - Opened by kislyuk over 3 years ago

#13 - Improve CLI help formatting

Issue - State: open - Opened by kislyuk over 3 years ago

#13 - Improve CLI help formatting

Issue - State: open - Opened by kislyuk over 3 years ago

#13 - Improve CLI help formatting

Issue - State: open - Opened by kislyuk over 3 years ago

#12 - Support refseq accession IDs

Issue - State: open - Opened by kislyuk over 3 years ago

#12 - Support refseq accession IDs

Issue - State: open - Opened by kislyuk over 3 years ago

#12 - Support refseq accession IDs

Issue - State: open - Opened by kislyuk over 3 years ago

#11 - Add a test for multithreaded writing

Issue - State: closed - Opened by kislyuk over 3 years ago - 1 comment

#11 - Add a test for multithreaded writing

Issue - State: closed - Opened by kislyuk over 3 years ago - 1 comment

#11 - Add a test for multithreaded writing

Issue - State: closed - Opened by kislyuk over 3 years ago - 1 comment

#10 - Ensure refseq_genome_accessions includes representative genomes

Issue - State: open - Opened by kislyuk over 3 years ago

#9 - Build ARM wheels

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#9 - Build ARM wheels

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#8 - Fix source build and check build from git source

Issue - State: closed - Opened by kislyuk over 3 years ago

#8 - Fix source build and check build from git source

Issue - State: closed - Opened by kislyuk over 3 years ago

#8 - Fix source build and check build from git source

Issue - State: closed - Opened by kislyuk over 3 years ago

#7 - Provide ARM wheels

Issue - State: closed - Opened by kislyuk over 3 years ago

#7 - Provide ARM wheels

Issue - State: closed - Opened by kislyuk over 3 years ago

#7 - Provide ARM wheels

Issue - State: closed - Opened by kislyuk over 3 years ago

#6 - Fall back to Wikipedia page title when common name is not available

Issue - State: open - Opened by kislyuk over 3 years ago

#6 - Fall back to Wikipedia page title when common name is not available

Issue - State: open - Opened by kislyuk over 3 years ago

#6 - Fall back to Wikipedia page title when common name is not available

Issue - State: open - Opened by kislyuk over 3 years ago

#5 - Virus neighbors and hosts file support

Issue - State: open - Opened by kislyuk over 3 years ago

#5 - Virus neighbors and hosts file support

Issue - State: open - Opened by kislyuk over 3 years ago

#5 - Virus neighbors and hosts file support

Issue - State: open - Opened by kislyuk over 3 years ago

#4 - Key error

Issue - State: open - Opened by nwheeler443 over 3 years ago - 8 comments

#4 - Key error

Issue - State: open - Opened by nwheeler443 over 3 years ago - 8 comments

#3 - Build wheels

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#3 - Build wheels

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#3 - Build wheels

Pull Request - State: closed - Opened by kislyuk over 3 years ago

#2 - Python 3.9 support

Issue - State: closed - Opened by kislyuk over 3 years ago

#2 - Python 3.9 support

Issue - State: closed - Opened by kislyuk over 3 years ago

#2 - Python 3.9 support

Issue - State: closed - Opened by kislyuk over 3 years ago

#1 - L10N support for wikipedia descriptions

Issue - State: open - Opened by kislyuk over 3 years ago

GitHub / taxoniq/taxoniq issues and pull requests