tanjimin/C.Origami issues and pull requests

#49 - GRAM importance score

Issue - State: open - Opened by thomas-reimonn about 1 month ago - 2 comments

#48 - Issues with Training the C.Origami Model Using Only Sequence Data and Integrating Multi-Species Data

Issue - State: open - Opened by hanshandong2024 about 1 month ago - 4 comments

#47 - Issues with Training the C.Origami Model Using Only Sequence Data and Integrating Multi-Species Data

Issue - State: closed - Opened by hanshandong2024 about 1 month ago

#46 - Training and prediction at 5kb resolution

Issue - State: closed - Opened by zhang-jiankun about 1 month ago - 2 comments

#45 - Reverse-compliment probably patch

Pull Request - State: closed - Opened by kaboroevich about 2 months ago - 1 comment

#44 - Reverse-compliment probably patch

Pull Request - State: closed - Opened by kaboroevich about 2 months ago

#43 - Independant chance of returning sequence complement

Issue - State: closed - Opened by kaboroevich about 2 months ago - 4 comments

#42 - A problem in the PositionalEncoding model code

Issue - State: open - Opened by kir1to455 4 months ago - 3 comments

#41 - Adding different ChIP-seq during the training phase ？

Issue - State: closed - Opened by kir1to455 4 months ago - 1 comment

#40 - How to makr trans interaction contacts prediction?

Issue - State: closed - Opened by linfanxiao 4 months ago - 5 comments

#39 - insulation score

Issue - State: open - Opened by wawpaopao 5 months ago - 5 comments

#38 - reproduce

Issue - State: open - Opened by wawpaopao 5 months ago - 4 comments

#37 - Using CTCF chip-exo without input

Issue - State: closed - Opened by re2srm 6 months ago - 5 comments

#36 - How to balance mcool files.

Issue - State: open - Opened by 1944498970 7 months ago - 1 comment

#35 - Single-cell ATACseq adaptability

Issue - State: open - Opened by archieandrews10 7 months ago - 1 comment

#34 - What method was used in the paper to convert the predictions into valid pairs?

Issue - State: open - Opened by rebeccaronai 7 months ago - 1 comment

#33 - Update screening.py

Pull Request - State: closed - Opened by tanjimin 8 months ago

#32 - The pre-trained models of other cell types

Issue - State: open - Opened by lhy0322 9 months ago - 1 comment

#31 - About comparison with Original HiC matrix

Issue - State: open - Opened by ahmedabbas811 about 1 year ago - 3 comments

#30 - Questions about performance comparison with deepC

Issue - State: closed - Opened by My-laniaKeA about 1 year ago - 2 comments

#29 - Request for evaluation code

Issue - State: closed - Opened by My-laniaKeA about 1 year ago - 2 comments

#28 - `examples/prediction.sh` generates blank Hi-C image for chromosome 15

Issue - State: closed - Opened by My-laniaKeA about 1 year ago - 2 comments

#27 - How to merge the predicted matrix and convert it back to valid pairs ？

Issue - State: closed - Opened by YCMaCY over 1 year ago - 2 comments

#26 - Can C.Origami predict the 3D chromatin with out CTCF ChIP-seq input data?

Issue - State: closed - Opened by YCMaCY over 1 year ago - 4 comments

#25 - Question about downscaling 10-kb matrix to 8192 bp resolution

Issue - State: closed - Opened by zhang-jiankun over 1 year ago - 4 comments

#24 - Adding chromosome-wide prediction

Issue - State: open - Opened by tanjimin over 1 year ago - 6 comments
Labels: enhancement

#23 - Questions when I process the Hi-C data

Issue - State: closed - Opened by YCMaCY over 1 year ago - 3 comments