Ecosyste.ms: Issues

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GitHub / tand826/wsiprocess issues and pull requests

#52 - Ndp view annotation

Pull Request - State: closed - Opened by tand826 about 1 year ago

#51 - removed as_completed to fix the way the progress bar counts up the pr…

Pull Request - State: closed - Opened by tand826 over 1 year ago

#50 - default extension from cli changed to jpg

Pull Request - State: closed - Opened by tand826 over 1 year ago

#49 - python bioformats is fast enough?

Issue - State: open - Opened by tand826 over 1 year ago - 8 comments

#48 - on_annotation parameter can be float or int

Pull Request - State: closed - Opened by tand826 over 1 year ago

#47 - list of annotation tools

Issue - State: open - Opened by tand826 over 1 year ago - 4 comments

#46 - pytorch dataloader for wsi(s)

Issue - State: closed - Opened by tand826 over 1 year ago - 1 comment

#45 - basic_usage.py No any result

Issue - State: closed - Opened by Gaodelike over 1 year ago - 6 comments

#44 - geojson

Issue - State: closed - Opened by tand826 over 1 year ago - 1 comment

#43 - on_annotation per class

Issue - State: closed - Opened by tand826 over 2 years ago - 1 comment

#42 - limit cores used in parallel patching

Issue - State: closed - Opened by tand826 over 2 years ago - 1 comment

#41 - save results as csv

Issue - State: closed - Opened by tand826 over 2 years ago - 1 comment

#40 - load rule from dict

Issue - State: closed - Opened by tand826 over 2 years ago - 1 comment

#39 - reduce memory consumption

Issue - State: closed - Opened by tand826 over 2 years ago - 3 comments

#38 - fix requirements versions

Issue - State: closed - Opened by tand826 over 2 years ago - 1 comment

#37 - warn if already patched

Issue - State: closed - Opened by tand826 almost 3 years ago - 1 comment

#36 - extension of extracted patch

Issue - State: closed - Opened by tand826 almost 3 years ago

#35 - OOM error when creating masks

Issue - State: closed - Opened by tand826 almost 3 years ago - 2 comments

#34 - extend rules

Issue - State: closed - Opened by tand826 almost 3 years ago

#33 - better thresholding methods

Issue - State: open - Opened by tand826 almost 3 years ago

#32 - annotation parser tutorial

Issue - State: closed - Opened by tand826 over 3 years ago - 1 comment

#31 - 30 usage to examples

Pull Request - State: closed - Opened by tand826 over 3 years ago

#30 - usages to example/usage1.py

Issue - State: closed - Opened by tand826 over 3 years ago - 1 comment

#29 - refactored parsers

Pull Request - State: closed - Opened by tand826 over 3 years ago

#28 - refactor parsers

Issue - State: closed - Opened by tand826 over 3 years ago

#27 - 22 backend change

Pull Request - State: closed - Opened by tand826 over 3 years ago

#26 - progress bar enabled with verbose option

Pull Request - State: closed - Opened by tand826 over 3 years ago

#25 - progress bar to show the patching status

Issue - State: closed - Opened by tand826 over 3 years ago

#24 - method name none is switched to evaluation

Pull Request - State: closed - Opened by tand826 over 3 years ago

#23 - method "None" to "evaluation"

Issue - State: closed - Opened by tand826 over 3 years ago - 1 comment

#22 - add openslide backend

Issue - State: closed - Opened by tand826 over 3 years ago

#21 - Crop Bounding Boxes after detection method extraction

Issue - State: closed - Opened by tand826 about 4 years ago - 3 comments

#20 - Parser for SlideRunner annotations

Issue - State: closed - Opened by tand826 about 4 years ago - 19 comments

#19 - Dot annotation to segmentation mask

Issue - State: open - Opened by tand826 about 4 years ago - 1 comment

#18 - WSI Process CLI Not Working

Issue - State: closed - Opened by bnapora about 4 years ago - 10 comments

#17 - Jupyter Notebook Examples

Issue - State: closed - Opened by bnapora about 4 years ago

#16 - update installation

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#15 - rst for readthedocs

Issue - State: closed - Opened by tand826 over 4 years ago - 2 comments

#14 - Patcher.find_bbs does not cover all the cases

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#13 - Add user specified function to patching

Issue - State: closed - Opened by tand826 over 4 years ago - 2 comments

#12 - progress of the patching

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#11 - better binary masks

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#10 - set extract_patches True as default from command line

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#9 - optimize args of cli.py

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#8 - ModuleNotFoundError: No module named 'wsiprocess.converters'

Issue - State: closed - Opened by Arghya999 over 4 years ago - 1 comment

#7 - Any guide to generate patches of images given a mask

Issue - State: closed - Opened by bharaniabhishek123 over 4 years ago - 1 comment

#6 - add meta functions

Issue - State: closed - Opened by tand826 over 4 years ago

#5 - enable magnification settings

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#4 - output as voc or coco style

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#3 - add documentation

Issue - State: closed - Opened by tand826 over 4 years ago - 3 comments

#2 - Implement on heroku as a free processing server

Issue - State: closed - Opened by tand826 over 4 years ago - 1 comment

#1 - Add to conda

Issue - State: closed - Opened by tand826 over 4 years ago - 2 comments