Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / talmolab/sleap-roots issues and pull requests

#94 - a

Issue - State: closed - Opened by sujee119 about 2 months ago - 1 comment

#93 - Bump to version 0.1.3 for release

Pull Request - State: closed - Opened by eberrigan 3 months ago - 2 comments

#92 - Add more tests for `get_chull_intersection_vectors`

Issue - State: open - Opened by eberrigan 3 months ago

#91 - Handle unsupported geometry types

Pull Request - State: closed - Opened by eberrigan 3 months ago - 2 comments

#90 - Modularize new convex hull related traits

Issue - State: open - Opened by eberrigan 3 months ago

#89 - Generalize video attribute

Issue - State: open - Opened by eberrigan 3 months ago

#86 - Bump version to 0.1.2

Pull Request - State: closed - Opened by eberrigan 5 months ago - 2 comments

#85 - Trait pipelines need more tests

Issue - State: open - Opened by eberrigan 5 months ago

#84 - Black format tests\test_trait_pipelines.py

Pull Request - State: closed - Opened by eberrigan 5 months ago - 2 comments

#83 - Correct `crown-curve-indices` definition in trait pipeline

Pull Request - State: closed - Opened by eberrigan 5 months ago - 2 comments

#82 - Root traits saved in JSON files

Issue - State: open - Opened by eberrigan 9 months ago

#81 - Use helper function to get intersection points for different geometries

Pull Request - State: closed - Opened by eberrigan 9 months ago - 2 comments

#80 - Upgrade python to 3.11

Pull Request - State: closed - Opened by eberrigan 9 months ago - 2 comments

#79 - `Series` class accepts .slp files

Pull Request - State: closed - Opened by eberrigan 9 months ago - 1 comment

#78 - Increase test coverage

Pull Request - State: closed - Opened by emdavis02 9 months ago - 2 comments

#77 - Fix new older monocot traits for edge cases

Pull Request - State: closed - Opened by eberrigan 9 months ago - 2 comments

#76 - Add quality control property for batch processing over genotypes

Pull Request - State: closed - Opened by eberrigan 9 months ago - 2 comments

#75 - Fix tips and add jupyter lab to the environment

Pull Request - State: closed - Opened by eberrigan 10 months ago - 2 comments

#74 - Add to documentation

Pull Request - State: closed - Opened by eberrigan 10 months ago - 1 comment

#73 - Exclude jupyter notebooks from language statistics

Pull Request - State: closed - Opened by eberrigan 10 months ago - 1 comment

#72 - Add jupyter notebooks for code instruction

Pull Request - State: closed - Opened by eberrigan 10 months ago - 2 comments

#71 - Add multiple dicot pipeline

Pull Request - State: closed - Opened by eberrigan 10 months ago - 3 comments

#70 - Update README.md

Pull Request - State: closed - Opened by talmo about 1 year ago - 1 comment

#69 - Update README.md

Pull Request - State: closed - Opened by eberrigan about 1 year ago - 2 comments

#68 - Rename `grav_index` to `curve_index`

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 2 comments

#67 - Fix `get_network_distribution`

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 3 comments

#66 - Extract traits using DicotPipeline

Issue - State: closed - Opened by linwang9926 over 1 year ago

#65 - Add `YoungerMonocotPipeline` to init

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 2 comments

#64 - Implement Younger Monocot Pipeline

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 2 comments

#63 - Update version number to 0.0.4

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 2 comments

#62 - Update sleap-io minimum version to be 0.0.11

Pull Request - State: closed - Opened by eberrigan over 1 year ago

#61 - Add numpy allowed versions

Pull Request - State: closed - Opened by eberrigan over 1 year ago

#60 - Add Python 3.7 as compatible version

Pull Request - State: closed - Opened by eberrigan over 1 year ago

#59 - Add checks and tests to ellipse fitter

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#58 - Fixes for dicot pipeline

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#57 - Fix node index calculation

Pull Request - State: closed - Opened by talmo over 1 year ago - 1 comment

#56 - Update README

Pull Request - State: closed - Opened by talmo over 1 year ago

#55 - Refactor root width calculation

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 2 comments

#54 - Implement older monocot pipeline

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 2 comments

#53 - Implement high level trait computation methods

Issue - State: open - Opened by talmo over 1 year ago

#52 - Add monocot pipelines

Issue - State: closed - Opened by talmo over 1 year ago - 1 comment

#51 - Refactor pipelines into classes

Pull Request - State: closed - Opened by talmo over 1 year ago - 1 comment

#50 - Elizabeth/pipeline cache 2

Pull Request - State: closed - Opened by eberrigan over 1 year ago

#48 - Refactoring trait pipeline (2/2)

Pull Request - State: closed - Opened by eberrigan over 1 year ago

#47 - Fix plotting for using sleap-io API

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#46 - Series.plot does not work with sleap sio.Labels

Issue - State: closed - Opened by eberrigan over 1 year ago

#45 - Refactoring trait pipeline (1/2)

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 2 comments

#44 - Speedup pipelining by add cache dict of scanline-, ellipse-, and chull-related traits

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 3 comments

#43 - Modify scanline functions for monocots.

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 1 comment

#42 - Scanline traits are all zeroes when monocots=True

Issue - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#41 - Add main function for high level pipeline

Pull Request - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#40 - Elizabeth/add main function for high level pipeline

Pull Request - State: closed - Opened by eberrigan over 1 year ago

#39 - get_traits_value_plant_summary takes length of float object

Issue - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#38 - Modify traits for monocots (rice)

Issue - State: closed - Opened by linwang9926 over 1 year ago - 2 comments

#37 - plant traits save as scalars

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 1 comment

#36 - Use sleap-io instead of sleap

Pull Request - State: closed - Opened by talmo over 1 year ago - 1 comment

#35 - Potential speedups in pipeline runtime

Issue - State: closed - Opened by eberrigan over 1 year ago - 5 comments

#34 - Disable warning spam from nan/empty slice operations

Issue - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#33 - Plant trait CSVs should save as scalars

Issue - State: closed - Opened by eberrigan over 1 year ago - 1 comment

#32 - Update scanline functions and get_pr/lr_pts function in series class.

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 1 comment

#31 - Add functions to extract 1035 traits per plant.

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 1 comment

#30 - Graph pipeline initial draft with test.

Pull Request - State: closed - Opened by linwang9926 over 1 year ago - 1 comment

#29 - Add frame-based trait calculation function

Issue - State: closed - Opened by linwang9926 almost 2 years ago - 4 comments

#28 - Add a computation time per trait

Issue - State: closed - Opened by linwang9926 almost 2 years ago

#27 - Add and test missing functions (base, tip, point, summary).

Pull Request - State: closed - Opened by linwang9926 almost 2 years ago - 1 comment

#26 - Add pipelining functions to extract traits per frame and per plant.

Pull Request - State: closed - Opened by linwang9926 almost 2 years ago - 1 comment

#25 - Modify the network length function for nan points.

Pull Request - State: closed - Opened by linwang9926 almost 2 years ago - 1 comment

#24 - Modify scanline function

Pull Request - State: closed - Opened by linwang9926 almost 2 years ago - 1 comment

#23 - Modify get_network_solidity function

Pull Request - State: closed - Opened by linwang9926 almost 2 years ago - 2 comments

#22 - Network solidity defined incorrectly

Issue - State: closed - Opened by eberrigan almost 2 years ago

#21 - Added tips to init

Pull Request - State: closed - Opened by eberrigan almost 2 years ago - 1 comment

#20 - Fixed scanline

Pull Request - State: closed - Opened by eberrigan almost 2 years ago

#19 - scanline.count_scaline_intersections filter

Issue - State: closed - Opened by eberrigan almost 2 years ago - 1 comment

#18 - Add and test network length and network length ratio functions

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#17 - Scan line function

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#16 - Add soy fixture

Pull Request - State: closed - Opened by eberrigan about 2 years ago - 1 comment

#15 - Trait: Network Length Distribution (Ldist)

Issue - State: closed - Opened by talmo about 2 years ago - 1 comment

#14 - Add stem width

Pull Request - State: closed - Opened by eberrigan about 2 years ago - 2 comments

#13 - Add convex hull function

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#12 - Added get_tips module.

Pull Request - State: closed - Opened by eberrigan about 2 years ago - 1 comment

#11 - Add root angle (based on base) module.

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#10 - Testing get bases function with exceptions

Pull Request - State: closed - Opened by eberrigan about 2 years ago - 3 comments

#9 - Add rice test data files and define as fixture.

Pull Request - State: closed - Opened by linwang9926 about 2 years ago

#8 - Add modules as top level imports

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#7 - Implement basic ellipse fitter

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#6 - Added bases functions

Pull Request - State: closed - Opened by eberrigan about 2 years ago - 1 comment

#5 - Add test lines in ellipse module

Pull Request - State: closed - Opened by linwang9926 about 2 years ago - 1 comment

#4 - Add initial bases traits module

Pull Request - State: closed - Opened by eberrigan about 2 years ago

#3 - Add backticks to Series docstring

Pull Request - State: closed - Opened by talmo about 2 years ago - 1 comment

#2 - Update installation instructions for development

Pull Request - State: closed - Opened by talmo about 2 years ago

#1 - Add SLEAP dependency & fix tests

Pull Request - State: closed - Opened by talmo about 2 years ago - 1 comment