Ecosyste.ms: Issues

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GitHub / tBuLi/symfit issues and pull requests

#371 - Fitting multidimensional datasets - symfit

Issue - State: open - Opened by opens21 10 months ago - 1 comment

#370 - First version of `symmip`, which adds tentative MIP support

Pull Request - State: open - Opened by tBuLi about 1 year ago - 5 comments
Labels: WIP

#369 - symfit special functions, exponential integral

Issue - State: closed - Opened by 1000NightsAKnight over 1 year ago - 13 comments

#368 - Initial conditions for different values of independent variable

Issue - State: closed - Opened by dolde over 1 year ago - 2 comments

#367 - Perform global sensitivity analysis of ODE system

Issue - State: open - Opened by lhdp0110 over 1 year ago - 1 comment

#366 - test_chained_min: relax test constraints

Pull Request - State: closed - Opened by stephanlachnit over 1 year ago - 6 comments

#365 - Py3 final migration

Pull Request - State: closed - Opened by tBuLi over 1 year ago - 1 comment

#364 - Sensitivity of Fit's slope/max values to model parameters

Issue - State: closed - Opened by lhdp0110 over 1 year ago - 1 comment

#363 - No compatible with numpy 1.24.1

Issue - State: closed - Opened by stephanlachnit over 1 year ago - 8 comments

#362 - Numba integration

Issue - State: open - Opened by pckroon almost 2 years ago - 3 comments

#361 - Symbolic objectives

Issue - State: open - Opened by pckroon almost 2 years ago

#360 - Models should be recursive

Issue - State: open - Opened by pckroon almost 2 years ago

#359 - Parameter and Variable shapes

Issue - State: open - Opened by pckroon almost 2 years ago

#358 - Symfit errors - not fitting to data

Issue - State: closed - Opened by chrismarsden7 almost 2 years ago - 1 comment

#357 - Initial values used don't match those declared

Issue - State: closed - Opened by lhdp0110 almost 2 years ago - 3 comments

#356 - Model evaluation problems encountered after several derivations

Issue - State: open - Opened by patquem almost 2 years ago - 6 comments

#355 - Create a Model from a constant expression returns an error

Issue - State: open - Opened by patquem almost 2 years ago - 2 comments

#354 - Update build matrix to py 3.7-3.11. Py3.6 is EOL

Pull Request - State: closed - Opened by pckroon almost 2 years ago - 2 comments
Labels: hacktoberfest-accepted

#353 - Hypothesis tests

Pull Request - State: open - Opened by pckroon almost 2 years ago
Labels: hacktoberfest-accepted

#352 - "Abnormal Termination in LNSRCH" Error

Issue - State: open - Opened by lhdp0110 almost 2 years ago - 2 comments

#351 - Unknown issue with super(type, obj) in fit.py

Issue - State: closed - Opened by lhdp0110 almost 2 years ago - 3 comments

#350 - Fitting custom model resulted using sympy

Issue - State: closed - Opened by karimzadehz about 2 years ago - 15 comments

#349 - sympy expression with arbitrary variables/parameters

Issue - State: open - Opened by kevinxxq over 2 years ago - 8 comments

#348 - `tests/test_minimizers.py::test_multiprocessing` fails on i386

Issue - State: open - Opened by stephanlachnit over 2 years ago - 1 comment

#347 - Pickle fails with sympy 1.9

Issue - State: closed - Opened by kvr2007 over 2 years ago - 4 comments

#346 - Example not works

Issue - State: closed - Opened by nfhktwrbq almost 3 years ago - 1 comment

#345 - fix deprecated syntax in setup.cfg (#344)

Pull Request - State: closed - Opened by ford--prefect almost 3 years ago - 2 comments
Labels: hacktoberfest-accepted

#344 - Fix deprecated syntax in setup.cfg

Issue - State: closed - Opened by ford--prefect almost 3 years ago - 1 comment

#343 - Switch out odeint for the more modern solve_ivp

Pull Request - State: closed - Opened by pckroon almost 3 years ago - 2 comments
Labels: hacktoberfest-accepted

#342 - Test failures

Pull Request - State: closed - Opened by pckroon almost 3 years ago
Labels: hacktoberfest-accepted

#341 - Fix #339 by defining t_smaller as < t0, and t_bigger as >= t0

Pull Request - State: open - Opened by pckroon almost 3 years ago
Labels: hacktoberfest-accepted

#340 - symfit stdev are NaN

Issue - State: open - Opened by anna-zk almost 3 years ago - 7 comments

#339 - ValueError for fit of ODEModel with additional data for t0

Issue - State: open - Opened by MrAnimaniac almost 3 years ago - 2 comments

#338 - Bad result for default surface fit

Issue - State: closed - Opened by nfhktwrbq about 3 years ago - 2 comments

#337 - Fitting multidimensional datasets by points

Issue - State: closed - Opened by nfhktwrbq about 3 years ago - 3 comments

#336 - Added no coveralls pytest action

Pull Request - State: closed - Opened by Jhsmit about 3 years ago - 1 comment

#335 - No coveralls

Pull Request - State: closed - Opened by Jhsmit about 3 years ago

#334 - Remove py35 & Travis-CI

Pull Request - State: closed - Opened by tBuLi about 3 years ago

#333 - Gaussian example

Pull Request - State: closed - Opened by Jhsmit about 3 years ago

#332 - Add Ipython/jupyter latex printing

Pull Request - State: closed - Opened by Jhsmit about 3 years ago

#331 - Changed setup_method to setup_module

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#330 - Remove six

Pull Request - State: closed - Opened by Jhsmit over 3 years ago

#329 - CI with GitHub Actions

Pull Request - State: closed - Opened by Jhsmit over 3 years ago - 6 comments

#328 - Fixed interactive fit tests, added ODE test

Pull Request - State: closed - Opened by Jhsmit over 3 years ago - 2 comments

#327 - Python 3.9 support

Pull Request - State: closed - Opened by Jhsmit over 3 years ago - 5 comments

#326 - Fix #325: decode status_message of LBFGSB if necessary

Pull Request - State: closed - Opened by antonykamp over 3 years ago - 2 comments

#325 - Minimizer LBFGSB has a bit-string as status_message

Issue - State: closed - Opened by antonykamp over 3 years ago - 6 comments

#324 - Conflicting fitting results with minimizer TrustConstr and COBYLA

Issue - State: closed - Opened by antonykamp over 3 years ago - 1 comment

#323 - Vacancy: Request for new collaborators

Issue - State: open - Opened by tBuLi over 3 years ago - 8 comments

#322 - Defining Models with numpy functions

Issue - State: closed - Opened by edmundsj almost 4 years ago - 2 comments

#321 - Change license to MIT

Pull Request - State: closed - Opened by pckroon almost 4 years ago - 10 comments
Labels: hacktoberfest-accepted

#320 - _cached_numerical_components AttributeError

Issue - State: open - Opened by tokamage almost 4 years ago

#319 - Pickle ModelOutput

Pull Request - State: closed - Opened by pckroon almost 4 years ago - 1 comment
Labels: hacktoberfest-accepted

#317 - Fix test failures and warnings from pytest within test suite

Pull Request - State: closed - Opened by brocksam about 4 years ago - 2 comments

#316 - Update requirements.txt

Pull Request - State: closed - Opened by Jhsmit about 4 years ago - 2 comments

#315 - Update requirements.txt

Pull Request - State: closed - Opened by Jhsmit about 4 years ago

#313 - Small typo: only considered only considered

Pull Request - State: closed - Opened by elgalu about 4 years ago

#312 - Manjaro install

Issue - State: closed - Opened by lucasemmoreira about 4 years ago - 1 comment

#311 - Questions about Fourier Series

Issue - State: closed - Opened by JohnsonW-z about 4 years ago - 6 comments

#310 - Fix DepricationWarnings causes by importing ABCs directly from collections

Pull Request - State: closed - Opened by brocksam about 4 years ago - 1 comment

#309 - License clarifications

Issue - State: closed - Opened by stephanlachnit about 4 years ago - 23 comments

#308 - Runtime warnings in documentation

Issue - State: closed - Opened by stephanlachnit about 4 years ago - 3 comments

#307 - pytest failures

Issue - State: closed - Opened by stephanlachnit about 4 years ago - 2 comments

#306 - documentation improvements

Pull Request - State: closed - Opened by stephanlachnit about 4 years ago - 6 comments

#305 - TrustConstr cannot handle LogLikelihood with constraints

Issue - State: closed - Opened by antonykamp about 4 years ago - 3 comments

#304 - Models don't have a __repr__ method

Issue - State: open - Opened by pckroon over 4 years ago - 1 comment

#303 - Support for tensorflow BFGS and DifferentialEvolution minimizers

Pull Request - State: closed - Opened by Jhsmit over 4 years ago

#302 - Minimizer Switch NameError: name 'NelderMead' is not defined

Issue - State: closed - Opened by richardgalt over 4 years ago - 1 comment

#301 - Implement ODEmodel in a piecewise manner

Issue - State: closed - Opened by RebetezG over 4 years ago - 3 comments

#300 - Added HadamardPower printing

Pull Request - State: closed - Opened by tBuLi over 4 years ago

#299 - Exposing sympy API

Issue - State: open - Opened by Jhsmit over 4 years ago - 2 comments

#298 - Added metaclass to create dummy Paramter/Variables

Pull Request - State: open - Opened by Jhsmit over 4 years ago - 4 comments

#297 - master tests fail on HadamardProduct

Issue - State: closed - Opened by Jhsmit over 4 years ago - 1 comment

#296 - Fixes issue 295

Pull Request - State: open - Opened by Jhsmit over 4 years ago - 6 comments

#295 - Creating several parameters with some missing bounds

Issue - State: open - Opened by Jhsmit over 4 years ago

#294 - Update gaussian.py

Pull Request - State: closed - Opened by Jhsmit over 4 years ago

#293 - Hessian performance

Issue - State: open - Opened by Jhsmit over 4 years ago - 9 comments

#292 - MINPACK minimizer with multiple datasets

Issue - State: open - Opened by Jhsmit over 4 years ago - 2 comments

#291 - Matrix bounds

Pull Request - State: open - Opened by Jhsmit over 4 years ago

#290 - Allow declaration of Dummy arguments instead of just Symbols

Issue - State: open - Opened by JohnGoertz over 4 years ago - 7 comments

#289 - Improve test_finite_difference and test_fit_result

Pull Request - State: closed - Opened by antonykamp almost 5 years ago - 47 comments

#288 - Make ODEModel a subclass of CallableNumericalModel

Pull Request - State: open - Opened by pckroon almost 5 years ago

#287 - Make constraints as Model instead of the same as their parent model

Pull Request - State: closed - Opened by pckroon almost 5 years ago - 5 comments

#286 - Confidence bands

Issue - State: open - Opened by pckroon almost 5 years ago
Labels: enhancement

#285 - Verbose fit

Pull Request - State: open - Opened by pckroon almost 5 years ago - 6 comments

#284 - Scaling ODEModel initial value parameters

Issue - State: open - Opened by JohnGoertz almost 5 years ago - 3 comments

#283 - Update .travis.yml to add python 3.8

Pull Request - State: closed - Opened by Jhsmit almost 5 years ago - 3 comments

#282 - ODEModel with constraints gives error

Issue - State: open - Opened by JohnGoertz almost 5 years ago - 2 comments
Labels: bug

#281 - data keyword for Fit

Issue - State: open - Opened by tBuLi almost 5 years ago - 1 comment

#280 - [Feature Request] Option to print progress updates

Issue - State: open - Opened by JohnGoertz almost 5 years ago - 10 comments
Labels: feature request

#279 - Allow Parameters as initial values for ODEModel

Pull Request - State: closed - Opened by pckroon almost 5 years ago - 3 comments

#277 - scipy requirements

Issue - State: closed - Opened by Jhsmit almost 5 years ago - 5 comments

#274 - Convert unittest to pytests

Pull Request - State: closed - Opened by antonykamp almost 5 years ago - 9 comments

#268 - Convert unittests to pytests

Pull Request - State: closed - Opened by antonykamp about 5 years ago - 35 comments

#266 - Fit does not warn when constraints are given with a minimizer that does not support them

Issue - State: open - Opened by bhclowers about 5 years ago - 5 comments
Labels: enhancement

#261 - Interactive notebook

Pull Request - State: open - Opened by Jhsmit over 5 years ago - 9 comments