Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / t-neumann/slamdunk issues and pull requests

#61 - Collapse possible bug in gene length

Issue - State: closed - Opened by KGillinder about 5 years ago - 2 comments

#60 - readCount and tcReadCount

Issue - State: closed - Opened by amitblum about 5 years ago - 2 comments

#59 - alleyoop RuntimeError

Issue - State: closed - Opened by kunUCSD about 5 years ago - 2 comments

#58 - Bed file for the whole transcriptome

Issue - State: closed - Opened by aleighbrown about 5 years ago - 6 comments

#57 - paired-end and other clarifications

Issue - State: closed - Opened by amitblum about 5 years ago - 13 comments

#56 - -mts flag

Issue - State: closed - Opened by dmiyagi about 5 years ago - 2 comments

#54 - Problem with final count

Issue - State: closed - Opened by moodswh over 5 years ago - 4 comments

#53 - empty count subdir for running slamdunk all

Issue - State: closed - Opened by charlin90 over 5 years ago - 24 comments

#52 - Question about Downstream Analysis

Issue - State: closed - Opened by dmiyagi over 5 years ago - 1 comment

#51 - Unable to install slamdunk from conda

Issue - State: closed - Opened by aleighbrown over 5 years ago - 14 comments

#50 - y axis in utrrates graph

Issue - State: closed - Opened by CSdady over 5 years ago - 3 comments

#49 - SNP calling is skipped

Issue - State: closed - Opened by bdespard over 5 years ago - 3 comments

#48 - Query about running the slamdunk all

Issue - State: closed - Opened by kunUCSD over 5 years ago - 12 comments

#47 - conversion in CDS

Issue - State: closed - Opened by CSdady over 5 years ago - 3 comments

#46 - error running slamdunk all

Issue - State: closed - Opened by dmiyagi almost 6 years ago - 6 comments

#45 - when installing slamdunk using conda, not finding NextGenMap

Issue - State: closed - Opened by RippeiHayashi almost 6 years ago - 22 comments

#44 - Clarified error messages.

Pull Request - State: closed - Opened by FitzsimmonsCM almost 6 years ago

#43 - failed to install the slamdunk via the server

Issue - State: closed - Opened by kunUCSD almost 6 years ago - 2 comments

#42 - No conversion rates

Issue - State: closed - Opened by abzzram almost 6 years ago - 7 comments

#41 - transcript half-life estimates

Issue - State: closed - Opened by santiago1234 about 6 years ago - 4 comments

#40 - XA tag used to estimate read length

Issue - State: open - Opened by t-neumann about 6 years ago

#39 - Pysam error when retreiving whole chromosome sequence

Issue - State: closed - Opened by t-neumann about 6 years ago - 1 comment

#37 - Trouble getting slamdunk map to work

Issue - State: closed - Opened by FelixKrueger about 6 years ago - 19 comments

#35 - Alleyoop Dedup is truncating output files

Issue - State: closed - Opened by swbarnes2 about 6 years ago - 3 comments

#33 - One or more input files don't exist error

Issue - State: closed - Opened by ayearley over 6 years ago - 5 comments

#31 - Problem with count dunk

Issue - State: closed - Opened by iyloh over 6 years ago - 31 comments

#25 - run error

Issue - State: closed - Opened by xbing88 over 6 years ago - 17 comments
Labels: bug

#15 - Check if chromosome names match bam/bed

Issue - State: open - Opened by t-neumann over 7 years ago - 6 comments
Labels: bug

#14 - Reverse stranded support

Issue - State: open - Opened by t-neumann over 7 years ago - 3 comments
Labels: enhancement

#10 - Unknown behaviour read > max read length

Issue - State: open - Opened by t-neumann over 7 years ago - 2 comments
Labels: bug