sysbiochalmers/yeast-gem issues and pull requests

#99 - Revert "Feat/add Gitter badge"

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#98 - Feat/add Gitter badge

Pull Request - State: closed - Opened by gitter-badger almost 7 years ago

#97 - Feat/rxnGeneMat

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#96 - fix: inter-OS issues

Issue - State: closed - Opened by BenjaSanchez almost 7 years ago - 8 comments
Labels: format fix, question, fixed in devel

#95 - Fix/new_formats

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#94 - Doc/improved readme

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago - 1 comment
Labels: format fix

#93 - Doc/name changes

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#92 - yeast 8.0.1

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: new release

#91 - Chore/update from devel

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#90 - Fix/remove empty notes

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#89 - Doc/change links in readme

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#88 - Feat/new formats

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago - 5 comments
Labels: enhancement

#87 - Add gene annotation for aminophospholipid transport in model

Issue - State: closed - Opened by hongzhonglu almost 7 years ago - 8 comments
Labels: question, wontfix

#86 - Doc/improved readme

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#85 - Feat/PR template

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#84 - Feat/issue template

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#83 - style: change repo's name

Issue - State: closed - Opened by BenjaSanchez almost 7 years ago - 18 comments
Labels: question, fixed in devel

#82 - yeast 8.0.0

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: new release

#81 - Feat/new formats

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#80 - Curation/reactions

Pull Request - State: closed - Opened by hongzhonglu almost 7 years ago - 9 comments

#79 - Chore/update from devel

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#78 - fix: add rxnGeneMat to COBRA structure

Issue - State: closed - Opened by hongzhonglu almost 7 years ago - 8 comments
Labels: format fix, fixed in devel

#77 - style: repo cleanup/order

Issue - State: closed - Opened by BenjaSanchez almost 7 years ago - 1 comment
Labels: format fix, fixed in devel

#76 - Doc/update readme

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#75 - feat: xls as release format

Issue - State: closed - Opened by haowang-bioinfo almost 7 years ago - 6 comments
Labels: format fix, fixed in devel

#74 - Curation/metabolites

Pull Request - State: closed - Opened by hongzhonglu almost 7 years ago - 4 comments

#73 - Feat/rxn correction based on isce926

Pull Request - State: closed - Opened by hongzhonglu almost 7 years ago - 1 comment

#72 - Fix/increaseVersion bug

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#71 - yeast 7.8.3

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: new release

#70 - Feat/drop SBML

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago
Labels: format fix

#69 - Chore/update from devel

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#68 - fix: drop SBML toolbox dependency

Issue - State: closed - Opened by BenjaSanchez almost 7 years ago - 1 comment
Labels: format fix, fixed in devel

#67 - Curation/metabolites

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago - 1 comment

#66 - Feat/track dependencies

Pull Request - State: closed - Opened by BenjaSanchez almost 7 years ago

#65 - abbreviation of metabolite name for yeast map

Issue - State: closed - Opened by hongzhonglu almost 7 years ago - 8 comments
Labels: question, wontfix

#64 - ATP/NADH issue

Issue - State: open - Opened by feiranl almost 7 years ago - 6 comments
Labels: question

#63 - feat: data files in repository

Issue - State: closed - Opened by hongzhonglu almost 7 years ago - 17 comments
Labels: question, fixed in devel

#62 - Curation/gene rules

Pull Request - State: closed - Opened by hongzhonglu almost 7 years ago - 13 comments

#61 - feat: compartment curation

Issue - State: open - Opened by feiranl about 7 years ago - 6 comments

#60 - fix: existing geneRules based on latest gene annotation

Issue - State: closed - Opened by hongzhonglu about 7 years ago - 2 comments
Labels: fixed in devel

#59 - fix: flux prediction through PPP

Issue - State: open - Opened by hongzhonglu about 7 years ago - 11 comments
Labels: help wanted

#58 - yeast 7.8.2

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago
Labels: new release

#57 - Feat/Track dependencies

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#56 - Curation/gene rules

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#55 - Fix/COBRA

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago
Labels: format fix

#54 - Chore/update from devel

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#53 - Chore/update from devel

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#52 - Chore/update from devel

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#51 - yeast 7.8.1

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago
Labels: new release

#50 - Feat/Track dependencies

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago
Labels: format fix

#49 - fix: drop storage of binaries

Issue - State: closed - Opened by BenjaSanchez about 7 years ago - 7 comments
Labels: question, fixed in devel

#48 - feat: track COBRA/RAVEN versions

Issue - State: closed - Opened by BenjaSanchez about 7 years ago - 8 comments
Labels: question, fixed in devel

#47 - Feat/track dependencies

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago
Labels: enhancement

#46 - Fix/doc changes

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#45 - Style/version removed from name

Pull Request - State: closed - Opened by BenjaSanchez about 7 years ago

#44 - feat: yaml as format for better diff

Issue - State: closed - Opened by edkerk about 7 years ago - 12 comments
Labels: format fix, enhancement, fixed in devel

#43 - feat: additional branches

Issue - State: closed - Opened by BenjaSanchez about 7 years ago - 4 comments
Labels: question, fixed in devel

#42 - Add keggID, pubmedID and confidence score for reaction

Pull Request - State: closed - Opened by hongzhonglu about 7 years ago - 2 comments

#41 - fix: upgraded cobra version

Pull Request - State: closed - Opened by hongzhonglu about 7 years ago

#40 - Feat: add reaction score for each reaction

Pull Request - State: closed - Opened by hongzhonglu about 7 years ago - 6 comments

#39 - FEAT:Added formulas for lipids

Pull Request - State: closed - Opened by feiranl about 7 years ago - 1 comment

#38 - feat: new reactions based on latest gene annotation

Issue - State: closed - Opened by hongzhonglu about 7 years ago - 18 comments
Labels: enhancement

#37 - fix: metabolite annotation information

Issue - State: closed - Opened by hongzhonglu about 7 years ago - 9 comments
Labels: fixed in devel

#36 - feat: confidence scores for reactions

Issue - State: closed - Opened by hongzhonglu over 7 years ago - 8 comments
Labels: enhancement, fixed in devel

#35 - fix: delete anaerobic branch

Issue - State: closed - Opened by BenjaSanchez over 7 years ago - 4 comments
Labels: question, fixed in devel

#34 - simplifying commits

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#33 - merge branches

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#32 - generalized changeBiomass function

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#31 - Anaerobic

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#30 - change version to 7.7

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#29 - modified saving function to update version

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#28 - minor readme format

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#27 - merged readme files

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#26 - format change

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#25 - merging branches

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#24 - change anaerobic branch to comply with new standard

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago - 1 comment

#23 - fix: make repo compliant with SysBio standards

Issue - State: closed - Opened by BenjaSanchez over 7 years ago - 5 comments
Labels: format fix, fixed in devel

#22 - catching up with master

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#21 - fix: lipid biomass composition

Issue - State: closed - Opened by edkerk over 7 years ago - 10 comments
Labels: enhancement, fixed in devel

#20 - changed EC notation

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#19 - fix: chemical formulas field

Issue - State: closed - Opened by BenjaSanchez over 7 years ago - 8 comments
Labels: format fix, fixed in devel

#18 - fix: add missing annotation

Issue - State: closed - Opened by simas232 over 7 years ago - 10 comments
Labels: fixed in devel

#17 - restore the list of Yeast 7.6 genes

Issue - State: closed - Opened by simas232 over 7 years ago - 2 comments
Labels: enhancement, question, wontfix

#16 - restore 'boundary' compartment

Issue - State: closed - Opened by simas232 over 7 years ago - 4 comments
Labels: format fix, fixed in devel

#15 - updated EC codes and subsystems

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#14 - fix: metCharges field

Issue - State: closed - Opened by simas232 over 7 years ago - 2 comments
Labels: format fix, fixed in devel

#13 - fix: existing geneRules based on iSce926

Issue - State: closed - Opened by BenjaSanchez over 7 years ago - 10 comments
Labels: fixed in devel

#12 - feat: apply curations from mitoYeast-GEM paper

Issue - State: open - Opened by BenjaSanchez over 7 years ago - 1 comment
Labels: enhancement, help wanted

#11 - fix: subSystems field

Issue - State: closed - Opened by BenjaSanchez over 7 years ago - 35 comments
Labels: fixed in devel

#10 - added gene names

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#9 - fix: notation of gene IDs that use the '-' character

Issue - State: closed - Opened by BenjaSanchez over 7 years ago - 1 comment
Labels: format fix, fixed in devel

#8 - updated readme

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago

#7 - Reformat files in anaerobic branch

Pull Request - State: closed - Opened by BenjaSanchez over 7 years ago - 1 comment

#6 - fix: gene ids to change in COBRA

Issue - State: closed - Opened by edkerk over 7 years ago - 2 comments
Labels: format fix, fixed in devel

#5 - update of anaerobic branch with master updates

Pull Request - State: closed - Opened by BenjaSanchez about 8 years ago - 1 comment

#4 - add missing fields to anaerobic model: rxnECNumbers and subSystems

Pull Request - State: closed - Opened by BenjaSanchez over 8 years ago

#3 - Make anaerobic branch FBC v2 compliant

Pull Request - State: closed - Opened by BenjaSanchez over 8 years ago - 1 comment

#2 - Sys milk branch

Pull Request - State: closed - Opened by BenjaSanchez almost 9 years ago - 1 comment

#1 - Ben branch

Pull Request - State: closed - Opened by BenjaSanchez almost 9 years ago - 1 comment

GitHub / sysbiochalmers/yeast-gem issues and pull requests