Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / synbiodex/sbol-specification issues and pull requests

#104 - Implementation

Pull Request - State: closed - Opened by cjmyers about 7 years ago

#104 - Implementation

Pull Request - State: closed - Opened by cjmyers about 7 years ago

#103 - Combo

Pull Request - State: closed - Opened by nroehner about 7 years ago

#103 - Combo

Pull Request - State: closed - Opened by nroehner about 7 years ago

#102 - Added Attachment class.

Pull Request - State: closed - Opened by ckmadsen about 7 years ago

#102 - Added Attachment class.

Pull Request - State: closed - Opened by ckmadsen about 7 years ago

#101 - Expand the definition of SBOL-compliant URI

Issue - State: closed - Opened by bbartley about 7 years ago - 3 comments
Labels: question, Needs SEP

#101 - Expand the definition of SBOL-compliant URI

Issue - State: closed - Opened by bbartley about 7 years ago - 3 comments
Labels: question, Needs SEP

#100 - Updates for provenance for SBOL 2.2.0

Pull Request - State: closed - Opened by cjmyers over 7 years ago - 1 comment

#100 - Updates for provenance for SBOL 2.2.0

Pull Request - State: closed - Opened by cjmyers over 7 years ago - 1 comment

#99 - wasGeneratedBy variable in prov-o UML Figure 29 should be 0..*

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: bug, Non-SEP change

#99 - wasGeneratedBy variable in prov-o UML Figure 29 should be 0..*

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: bug, Non-SEP change

#98 - 2.1.0 Specification has contradicting examples of the PROVO-O namespace

Issue - State: closed - Opened by bbartley almost 8 years ago - 2 comments
Labels: bug, Non-SEP change

#98 - 2.1.0 Specification has contradicting examples of the PROVO-O namespace

Issue - State: closed - Opened by bbartley almost 8 years ago - 2 comments
Labels: bug, Non-SEP change

#96 - displayId is not meaningfully optional

Issue - State: closed - Opened by chrismacklin almost 8 years ago - 15 comments
Labels: presentation issues, Non-SEP change

#96 - displayId is not meaningfully optional

Issue - State: closed - Opened by chrismacklin almost 8 years ago - 15 comments
Labels: presentation issues, Non-SEP change

#95 - Authors field for ComponentDefinitions (and other things?)

Issue - State: closed - Opened by graik almost 8 years ago - 1 comment
Labels: presentation issues, Non-SEP change

#95 - Authors field for ComponentDefinitions (and other things?)

Issue - State: closed - Opened by graik almost 8 years ago - 1 comment
Labels: presentation issues, Non-SEP change

#93 - Fix examples

Pull Request - State: closed - Opened by cjmyers about 8 years ago - 2 comments

#93 - Fix examples

Pull Request - State: closed - Opened by cjmyers about 8 years ago - 2 comments

#92 - Problem with URIs in Example B.1.7

Issue - State: closed - Opened by cjmyers about 8 years ago - 1 comment
Labels: bug, Non-SEP change

#92 - Problem with URIs in Example B.1.7

Issue - State: closed - Opened by cjmyers about 8 years ago - 1 comment
Labels: bug, Non-SEP change

#91 - Specify deletion mutations

Issue - State: closed - Opened by jakebeal about 8 years ago - 3 comments
Labels: enhancement, Needs SEP

#91 - Specify deletion mutations

Issue - State: closed - Opened by jakebeal about 8 years ago - 3 comments
Labels: enhancement, Needs SEP

#89 - Best practice needed to add extra rdf:type to distinguish GenericTopLevels

Issue - State: closed - Opened by cjmyers about 8 years ago - 3 comments
Labels: enhancement, Needs SEP

#89 - Best practice needed to add extra rdf:type to distinguish GenericTopLevels

Issue - State: closed - Opened by cjmyers about 8 years ago - 3 comments
Labels: enhancement, Needs SEP

#88 - Need a validation rule for namespace to end with delimiter

Issue - State: closed - Opened by cjmyers about 8 years ago - 4 comments
Labels: Non-SEP change, validation rules

#88 - Need a validation rule for namespace to end with delimiter

Issue - State: closed - Opened by cjmyers about 8 years ago - 4 comments
Labels: Non-SEP change, validation rules

#87 - Implementation of SEP12 into specification

Pull Request - State: closed - Opened by jakebeal about 8 years ago - 4 comments

#87 - Implementation of SEP12 into specification

Pull Request - State: closed - Opened by jakebeal about 8 years ago - 4 comments

#86 - Vertical Orientation Option

Issue - State: closed - Opened by jfarlow about 8 years ago - 2 comments

#86 - Vertical Orientation Option

Issue - State: closed - Opened by jfarlow about 8 years ago - 2 comments

#85 - Typo in Prov-o figure (Figure 29)

Issue - State: closed - Opened by cjmyers about 8 years ago - 1 comment

#85 - Typo in Prov-o figure (Figure 29)

Issue - State: closed - Opened by cjmyers about 8 years ago - 1 comment

#84 - wasDerivedFrom should be 0..n

Issue - State: closed - Opened by jakebeal about 8 years ago - 1 comment
Labels: enhancement, Needs SEP

#84 - wasDerivedFrom should be 0..n

Issue - State: closed - Opened by jakebeal about 8 years ago - 1 comment
Labels: enhancement, Needs SEP

#83 - Sequence by reference

Issue - State: closed - Opened by jakebeal about 8 years ago - 2 comments
Labels: enhancement, Needs SEP

#83 - Sequence by reference

Issue - State: closed - Opened by jakebeal about 8 years ago - 2 comments
Labels: enhancement, Needs SEP

#81 - Sep011

Pull Request - State: closed - Opened by cjmyers about 8 years ago

#81 - Sep011

Pull Request - State: closed - Opened by cjmyers about 8 years ago

#80 - New authors

Pull Request - State: closed - Opened by tramyn about 8 years ago

#80 - New authors

Pull Request - State: closed - Opened by tramyn about 8 years ago

#79 - Updated the provenance examples using libSBOLj

Pull Request - State: closed - Opened by goksel about 8 years ago

#79 - Updated the provenance examples using libSBOLj

Pull Request - State: closed - Opened by goksel about 8 years ago

#78 - Changing 2.0 to 2.1, 2.x or just 2 as appropriate

Pull Request - State: closed - Opened by jakebeal over 8 years ago - 5 comments

#78 - Changing 2.0 to 2.1, 2.x or just 2 as appropriate

Pull Request - State: closed - Opened by jakebeal over 8 years ago - 5 comments

#77 - Extended the best practices with the provenance section

Pull Request - State: closed - Opened by goksel over 8 years ago

#76 - SBOL 2.0 to SBOL 2.x

Issue - State: closed - Opened by jakebeal over 8 years ago
Labels: presentation issues

#76 - SBOL 2.0 to SBOL 2.x

Issue - State: closed - Opened by jakebeal over 8 years ago
Labels: presentation issues

#75 - Update SequenceAnnotation UML

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#75 - Update SequenceAnnotation UML

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#74 - Mentioned GenBank feature

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#74 - Mentioned GenBank feature

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#73 - Best practices using colons in URIs

Issue - State: closed - Opened by cjmyers over 8 years ago - 1 comment
Labels: Non-SEP change

#73 - Best practices using colons in URIs

Issue - State: closed - Opened by cjmyers over 8 years ago - 1 comment
Labels: Non-SEP change

#72 - Add Provenance recommendations to best practices

Issue - State: closed - Opened by cjmyers over 8 years ago - 1 comment
Labels: Non-SEP change

#72 - Add Provenance recommendations to best practices

Issue - State: closed - Opened by cjmyers over 8 years ago - 1 comment
Labels: Non-SEP change

#71 - Removed role integration from SA

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#71 - Removed role integration from SA

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#70 - Sequence annotation cannot have both a role and a component

Issue - State: closed - Opened by jakebeal over 8 years ago - 2 comments
Labels: enhancement, Needs SEP, Non-SEP change

#70 - Sequence annotation cannot have both a role and a component

Issue - State: closed - Opened by jakebeal over 8 years ago - 2 comments
Labels: enhancement, Needs SEP, Non-SEP change

#69 - Add interaction sbo terms

Pull Request - State: closed - Opened by tramyn over 8 years ago - 2 comments

#69 - Add interaction sbo terms

Pull Request - State: closed - Opened by tramyn over 8 years ago - 2 comments

#68 - Need to add discussion about using Roles on SequenceAnnotations

Issue - State: closed - Opened by cjmyers over 8 years ago - 2 comments

#68 - Need to add discussion about using Roles on SequenceAnnotations

Issue - State: closed - Opened by cjmyers over 8 years ago - 2 comments

#67 - Completed edits for new roles/roleIntegration fields.

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#67 - Completed edits for new roles/roleIntegration fields.

Pull Request - State: closed - Opened by cjmyers over 8 years ago

#66 - Integrate the substance of SEP 004 into SBOL-specification.

Pull Request - State: closed - Opened by mikebissell over 8 years ago - 3 comments

#66 - Integrate the substance of SEP 004 into SBOL-specification.

Pull Request - State: closed - Opened by mikebissell over 8 years ago - 3 comments

#65 - Representation of combinatorial assemblies

Issue - State: closed - Opened by jakebeal over 8 years ago - 1 comment
Labels: duplicate

#65 - Representation of combinatorial assemblies

Issue - State: closed - Opened by jakebeal over 8 years ago - 1 comment
Labels: duplicate

#64 - Update link for URI syntax in rules 10201 and 10203

Issue - State: closed - Opened by zgzn over 8 years ago - 1 comment

#64 - Update link for URI syntax in rules 10201 and 10203

Issue - State: closed - Opened by zgzn over 8 years ago - 1 comment

#63 - refer to W3C recommendation for "cool URIs" in RDF

Issue - State: closed - Opened by graik over 8 years ago - 1 comment
Labels: question, presentation issues, Non-SEP change

#63 - refer to W3C recommendation for "cool URIs" in RDF

Issue - State: closed - Opened by graik over 8 years ago - 1 comment
Labels: question, presentation issues, Non-SEP change

#62 - Version 2.1 SEP 4 UML Update

Pull Request - State: closed - Opened by nroehner over 8 years ago

#62 - Version 2.1 SEP 4 UML Update

Pull Request - State: closed - Opened by nroehner over 8 years ago

#61 - rule-10601 has been removed

Issue - State: closed - Opened by jakebeal over 8 years ago - 2 comments
Labels: bug

#60 - SBOL 2.0.1 Edits

Pull Request - State: closed - Opened by nroehner over 8 years ago - 1 comment

#59 - Representing circular elements

Issue - State: closed - Opened by jakebeal almost 9 years ago - 5 comments
Labels: enhancement, Needs SEP

#58 - New rule 10527

Issue - State: closed - Opened by cjmyers almost 9 years ago - 5 comments
Labels: question, ready-for-pull

#57 - Revise rule 10511

Issue - State: closed - Opened by cjmyers almost 9 years ago - 9 comments
Labels: question, ready-for-pull

#56 - wasDerivedFrom checks only for TopLevel

Issue - State: closed - Opened by cjmyers almost 9 years ago - 3 comments
Labels: Non-SEP change, ready-for-pull

#55 - Better describe the purpose of displayId

Issue - State: closed - Opened by graik almost 9 years ago - 5 comments
Labels: presentation issues, Non-SEP change

#54 - displayId should be renamed

Issue - State: closed - Opened by 3ach almost 9 years ago - 7 comments
Labels: Needs SEP

#52 - Implement InteractionDefinition

Issue - State: closed - Opened by jamesamcl almost 9 years ago
Labels: enhancement, Needs SEP

#51 - Quick grammar fixes

Issue - State: closed - Opened by michael13162 almost 9 years ago - 2 comments
Labels: Non-SEP change, ready-for-pull

#50 - Rules sbol-10517 and sbol-10516 overlap

Issue - State: closed - Opened by cjmyers almost 9 years ago - 1 comment
Labels: Non-SEP change, ready-for-pull

#49 - Validation rules for Annotations and Generic Top Levels

Issue - State: closed - Opened by cjmyers almost 9 years ago - 1 comment
Labels: Non-SEP change, ready-for-pull

#48 - Make a new category for weak required rules that are impossible to check

Issue - State: closed - Opened by zgzn almost 9 years ago - 1 comment
Labels: Non-SEP change, ready-for-pull

#47 - Mention Maven semantic versioning in rule 10211

Issue - State: closed - Opened by zgzn almost 9 years ago - 3 comments
Labels: Non-SEP change, ready-for-pull

#46 - Rule 10806 can be more specific

Issue - State: closed - Opened by cjmyers almost 9 years ago - 3 comments
Labels: Non-SEP change, ready-for-pull

#45 - Remove rule 10205

Issue - State: closed - Opened by cjmyers almost 9 years ago - 7 comments
Labels: Needs SEP

#44 - Rules for inherited, required, and optional properties should be revised

Issue - State: closed - Opened by cjmyers almost 9 years ago - 5 comments
Labels: Non-SEP change, ready-for-pull

#43 - Add more requirement to sbol-10207 to allow it to be checked.

Issue - State: closed - Opened by zgzn almost 9 years ago - 2 comments
Labels: Non-SEP change, ready-for-pull

#42 - Define precise meaning of "locally unique" for sbol-10205

Issue - State: closed - Opened by zgzn almost 9 years ago - 10 comments
Labels: Non-SEP change, ready-for-pull

#41 - Need a rule to disallow annotations in SBOL namespace

Issue - State: closed - Opened by cjmyers almost 9 years ago - 11 comments
Labels: Non-SEP change, ready-for-pull

#40 - Need validation rule that there should only be one SBOL namespace

Issue - State: closed - Opened by cjmyers almost 9 years ago - 5 comments
Labels: Non-SEP change, ready-for-pull

#39 - Need validation rule on uniqueness of persistent identities

Issue - State: closed - Opened by cjmyers almost 9 years ago - 2 comments
Labels: Non-SEP change, ready-for-pull