Ecosyste.ms: Issues

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GitHub / sydney-informatics-hub/parabricks-genomics-nf issues and pull requests

#33 - Minimap2 in new parabricks version

Issue - State: closed - Opened by xuxocast about 1 month ago - 1 comment
Labels: enhancement

#32 - Update README.md

Pull Request - State: closed - Opened by georgiesamaha 3 months ago

#31 - Parabricks 4.3.1-1 failed

Issue - State: closed - Opened by YettaWang 5 months ago - 1 comment
Labels: bug

#30 - glnexus resources

Issue - State: closed - Opened by calizilla 6 months ago
Labels: bug, documentation, enhancement

#29 - Change glnexus container

Pull Request - State: closed - Opened by calizilla 6 months ago - 1 comment

#28 - Fix typo re: feature request

Pull Request - State: closed - Opened by georgiesamaha 7 months ago

#27 - Add acknowledgements and citation

Pull Request - State: closed - Opened by georgiesamaha 7 months ago

#26 - Add workflow diagram

Pull Request - State: closed - Opened by georgiesamaha 7 months ago

#25 - Add test data for execution testing

Pull Request - State: closed - Opened by georgiesamaha 7 months ago - 1 comment
Labels: enhancement

#24 - Add integration with Seqera platform with `nextflow.schema`

Issue - State: open - Opened by georgiesamaha 7 months ago
Labels: enhancement

#23 - Create CITATION.cff

Pull Request - State: closed - Opened by georgiesamaha 7 months ago

#22 - Issues templates

Issue - State: closed - Opened by georgiesamaha 8 months ago - 1 comment

#21 - MultiQC report

Issue - State: closed - Opened by georgiesamaha 8 months ago - 1 comment

#20 - Configure for Gadi

Pull Request - State: closed - Opened by georgiesamaha 8 months ago

#19 - Add some QC reporting

Pull Request - State: closed - Opened by georgiesamaha 8 months ago

#18 - added account, lstorage and SingCache flexibility

Pull Request - State: closed - Opened by calizilla 8 months ago
Labels: enhancement

#17 - Documentation: README

Issue - State: closed - Opened by georgiesamaha 8 months ago - 1 comment

#16 - Add variant annotation with VEP

Pull Request - State: closed - Opened by georgiesamaha 9 months ago - 2 comments

#15 - Process: annotate variants

Issue - State: closed - Opened by georgiesamaha 9 months ago

#14 - Add GATK CollectBamMetrics module

Pull Request - State: closed - Opened by georgiesamaha 9 months ago

#13 - Process: bam metrics

Issue - State: closed - Opened by georgiesamaha 9 months ago

#12 - Add glnexus joint genotype and bcf > vcf conversion modules

Pull Request - State: closed - Opened by georgiesamaha 9 months ago - 1 comment

#11 - Configure execution for Gadi

Issue - State: open - Opened by georgiesamaha 9 months ago

#10 - Process: joint genotype

Issue - State: closed - Opened by georgiesamaha 9 months ago

#9 - Add deepvariant module

Pull Request - State: closed - Opened by georgiesamaha 9 months ago - 1 comment

#8 - Process: deepvariant

Issue - State: closed - Opened by georgiesamaha 9 months ago

#7 - Add fq2bam module

Pull Request - State: closed - Opened by georgiesamaha 9 months ago - 1 comment

#6 - Process: validate fasta input

Issue - State: closed - Opened by georgiesamaha 9 months ago - 1 comment

#5 - Process: pbrun fq2bam

Issue - State: closed - Opened by georgiesamaha 9 months ago

#4 - Code base: test data

Issue - State: closed - Opened by georgiesamaha 9 months ago
Labels: enhancement

#3 - Process: index fasta

Issue - State: closed - Opened by georgiesamaha 9 months ago

#2 - Process: check inputs

Issue - State: closed - Opened by georgiesamaha 9 months ago