Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / svkucheryavski/mdatools issues and pull requests

#115 - Citing your package

Issue - State: closed - Opened by EOMAK91 over 1 year ago - 1 comment

#114 - error in summary when cv values are manually defined

Issue - State: open - Opened by svkucheryavski over 1 year ago
Labels: bug

#113 - add scaling scope for cross-validation

Issue - State: open - Opened by svkucheryavski over 1 year ago
Labels: improvements

#112 - `plotResiduals()` for PCA result object does not show labels

Issue - State: open - Opened by svkucheryavski almost 2 years ago
Labels: bug

#111 - `selectCompNum.pls` shows unexpected warning

Issue - State: open - Opened by svkucheryavski almost 2 years ago
Labels: bug

#110 - Not working with rmarkdown

Issue - State: closed - Opened by GregChojecki about 2 years ago - 3 comments

#109 - Error in `summary.simcares` when no reference class labels are used

Issue - State: closed - Opened by svkucheryavski about 2 years ago - 1 comment
Labels: bug

#108 - bug in `getRegcoeffs()`

Issue - State: closed - Opened by svkucheryavski over 2 years ago - 1 comment

#107 - some plots raise error when there is one component in a model

Issue - State: closed - Opened by svkucheryavski almost 3 years ago - 1 comment
Labels: bug

#106 - Implement more stable version of SIMPLS algorithm

Issue - State: closed - Opened by svkucheryavski almost 3 years ago - 2 comments
Labels: improvements

#105 - Improve performance of `prep.alsbasecorr()` function

Issue - State: closed - Opened by svkucheryavski almost 3 years ago - 1 comment
Labels: improvements

#104 - Improve performance of `prep.savgol`

Issue - State: closed - Opened by svkucheryavski almost 3 years ago - 1 comment
Labels: improvements

#102 - simcam 3D graph

Issue - State: closed - Opened by chris-santos about 3 years ago - 1 comment

#101 - functions missing?

Issue - State: closed - Opened by czanetti about 3 years ago - 3 comments

#100 - The 'main' parameter in plotXYresiduals() is not responding

Issue - State: closed - Opened by TYMichaelsen over 3 years ago - 1 comment

#99 - User defined pure variables index in `mcrpure` function should be used as is.

Issue - State: closed - Opened by svkucheryavski almost 4 years ago
Labels: bug

#98 - Row names are dropped when dataset for PCA is provided in form of a data frame

Issue - State: closed - Opened by svkucheryavski almost 4 years ago - 1 comment
Labels: bug

#97 - Make possible to run iPLS with test set validation

Issue - State: closed - Opened by svkucheryavski almost 4 years ago - 1 comment
Labels: improvements

#96 - Add procrustes cross-validation method

Issue - State: closed - Opened by svkucheryavski about 4 years ago
Labels: new feature

#95 - Object with PLS-DA results must also have class `regres`

Issue - State: closed - Opened by svkucheryavski about 4 years ago
Labels: bug

#94 - Wrong axes limits in PCA distance plot when data contains excluded outliers

Issue - State: closed - Opened by svkucheryavski about 4 years ago
Labels: bug

#93 - PLS-DA: Use different component counts for groups

Issue - State: closed - Opened by Thosty over 4 years ago - 2 comments

#92 - Number of point inside Hotelling ellipse.

Issue - State: closed - Opened by mashranga over 4 years ago - 3 comments

#91 - Bugfix and documentation formatting for simcam performance stats

Pull Request - State: closed - Opened by svonallmen over 4 years ago - 2 comments

#90 - Implement CARS variable selection method

Issue - State: closed - Opened by svkucheryavski over 4 years ago
Labels: new feature

#89 - Move build check from Travis CI to GitHub actions

Issue - State: closed - Opened by svkucheryavski over 4 years ago - 1 comment
Labels: improvements

#88 - Strange bug in PLS algorithm

Issue - State: closed - Opened by svkucheryavski over 4 years ago - 3 comments
Labels: bug

#87 - Replace if...stop sanity checks

Issue - State: closed - Opened by svkucheryavski almost 5 years ago - 1 comment
Labels: improvements

#86 - Singular matrix problem in PLS

Issue - State: closed - Opened by svkucheryavski almost 5 years ago
Labels: bug

#85 - Problem in PLS when y is data frame

Issue - State: closed - Opened by svkucheryavski almost 5 years ago
Labels: bug

#84 - Refactor preprocessing methods

Issue - State: closed - Opened by svkucheryavski almost 5 years ago
Labels: improvements

#83 - Improve error messages in the package

Issue - State: closed - Opened by svkucheryavski almost 5 years ago - 1 comment
Labels: improvements

#82 - categorize.pls() method does not work correctly with test set

Issue - State: closed - Opened by svkucheryavski almost 5 years ago
Labels: bug

#81 - Add dimension check

Issue - State: closed - Opened by svkucheryavski almost 5 years ago - 1 comment
Labels: improvements

#79 - Add possibility to show only one limit on distance plot

Issue - State: closed - Opened by svkucheryavski about 5 years ago - 1 comment
Labels: improvements

#78 - Add possibility to show Hotelling ellipse on scores plot

Issue - State: closed - Opened by svkucheryavski about 5 years ago - 1 comment
Labels: improvements

#77 - SIMPLS cuts number of PLS components if y-values are small

Issue - State: closed - Opened by svkucheryavski about 5 years ago - 1 comment
Labels: improvements

#76 - Improve scatter plot functionality for pch = 21:25

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#75 - Improve plot colors in color grouping with discrete values

Issue - State: closed - Opened by svkucheryavski over 5 years ago
Labels: improvements

#74 - make plotExtreme a part of PCA model and results

Issue - State: closed - Opened by svkucheryavski over 5 years ago
Labels: improvements

#72 - Add plots for degrees of freedom (PCA, SIMCA)

Issue - State: closed - Opened by svkucheryavski over 5 years ago
Labels: new feature

#71 - Add possibility for log transform of values on residuals plot (PCA, SIMCA)

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: new feature

#70 - Show object categories on residuals plot (PCA, SIMCA)

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#69 - Make lim.type = "ddmoments" as default in PCA model

Issue - State: closed - Opened by svkucheryavski over 5 years ago
Labels: improvements

#68 - Add optional "res" parameter to model plots

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: new feature

#67 - Rewrite plotting functions for models

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#66 - Rewrite pls and plsres classes so they are based on mlr and mlres

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#65 - Implement classes mlr and mlrres

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: new feature

#64 - Implement classes regres and regmodel

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: new feature

#63 - Rewrite plotting functions for result objects so they can return data

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#62 - Change the way results are stored inside a model

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#61 - Make sure grid is not made on top of plot series in mdaplotg

Issue - State: closed - Opened by svkucheryavski over 5 years ago - 1 comment
Labels: improvements

#60 - Improve color bar look when cgroup parameter is a factor

Issue - State: closed - Opened by svkucheryavski over 5 years ago
Labels: improvements

#59 - prep.autoscale does not work well with negative data

Issue - State: closed - Opened by Garrus990 over 5 years ago - 1 comment

#57 - selectCompNum.pls: bug in implementation of Wold method

Issue - State: closed - Opened by svkucheryavski over 6 years ago
Labels: bug

#56 - iPLS: correct calculation of RMSECV and loop break

Issue - State: closed - Opened by svkucheryavski over 6 years ago
Labels: bug

#55 - New option for mdaplot/mdaplotg — `pgroup`

Issue - State: closed - Opened by svkucheryavski over 6 years ago - 1 comment
Labels: improvements

#54 - Improve PLS-DA for one-class case

Issue - State: closed - Opened by svkucheryavski over 6 years ago - 1 comment
Labels: improvements

#53 - Semitransparent colours for plots

Issue - State: closed - Opened by svkucheryavski almost 7 years ago - 1 comment
Labels: new feature

#52 - Scatter plot with colour grouping should support combination of factors

Issue - State: closed - Opened by svkucheryavski almost 7 years ago - 1 comment
Labels: improvements

#51 - Wrong estimation of number of components in PCA/SIMCA

Issue - State: closed - Opened by svkucheryavski almost 7 years ago - 1 comment
Labels: bug

#50 - Chapter about PLS-DA in the book down tutorial

Issue - State: closed - Opened by svkucheryavski almost 7 years ago - 1 comment
Labels: new feature

#49 - Show convex hull or confidence ellipses on scatter plots

Issue - State: closed - Opened by svkucheryavski almost 7 years ago
Labels: new feature

#48 - Improve scatter density plots

Issue - State: closed - Opened by svkucheryavski almost 7 years ago - 1 comment
Labels: improvements

#47 - implementation of Data Driven SIMCA method

Issue - State: closed - Opened by svkucheryavski over 7 years ago - 1 comment
Labels: new feature

#46 - make plotting functions work correctly if data frame contains factors

Issue - State: closed - Opened by svkucheryavski almost 8 years ago
Labels: improvements

#45 - create a new package for all plotting methods — mdaplots

Issue - State: closed - Opened by svkucheryavski almost 8 years ago
Labels: improvements

#44 - labels for cross-validated results are numbers instead of names

Issue - State: closed - Opened by svkucheryavski almost 8 years ago
Labels: bug

#43 - Double labels in regression coefficients plot with errorbars

Issue - State: closed - Opened by svkucheryavski almost 8 years ago
Labels: bug

#42 - Typo in help text for pca()

Issue - State: closed - Opened by svkucheryavski almost 8 years ago
Labels: bug

#41 - vertical line in a mdaplotg

Issue - State: closed - Opened by nforquet almost 8 years ago - 3 comments

#40 - Pre-processing from training set applied to test set

Issue - State: closed - Opened by benkraj almost 8 years ago - 2 comments

#39 - preprocessing as an object

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: new feature

#38 - Implementation of purity based method for spectral unmixing

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: new feature

#37 - implementation of MCR-ALS with several simple constrains

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: new feature

#36 - possibility to exclude objects and variables

Issue - State: closed - Opened by svkucheryavski over 8 years ago
Labels: new feature

#35 - improvements to plotting functions

Issue - State: closed - Opened by svkucheryavski over 8 years ago
Labels: improvements

#34 - support for images

Issue - State: closed - Opened by svkucheryavski over 8 years ago
Labels: improvements

#33 - support for manual XTick values (e.g. wavelength, wavenumbers, etc.)

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: improvements

#32 - random based method for PLS ("randsimpls")

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment

#31 - random based methods for PCA ("randsvd", "randnipals", "randeig")

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: new feature

#30 - new "mlr" object for MLR implementation with L1/L2 penalties

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: new feature

#29 - improve cross-validation performance

Issue - State: closed - Opened by svkucheryavski over 8 years ago
Labels: improvements

#28 - fix typo in selectivity ratio plot

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: bug

#27 - add an option for showing table with statistics on predictions plots

Issue - State: closed - Opened by svkucheryavski over 8 years ago - 1 comment
Labels: improvements

#26 - show % of explained variance on scores/loadings plots

Issue - State: closed - Opened by svkucheryavski over 8 years ago
Labels: improvements

#25 - Minor fixes: roxygen and People.RData -> people.RData

Pull Request - State: closed - Opened by zeehio almost 9 years ago

#24 - plotVariance fails if it's the first plot in the script.

Issue - State: closed - Opened by zeehio almost 9 years ago - 1 comment

#23 - Check selectivity ratio, VIP scores for PLS-DA and PLS

Issue - State: closed - Opened by svkucheryavski almost 11 years ago
Labels: bug

#22 - Test set Y cumulative variance calculation problem

Issue - State: closed - Opened by svkucheryavski almost 11 years ago
Labels: bug

#21 - Automatic selection of optimal components if CV or test validation is used

Issue - State: closed - Opened by svkucheryavski almost 11 years ago
Labels: improvements

#19 - Correct width of code in examples (check generated PDF)

Issue - State: closed - Opened by svkucheryavski almost 11 years ago
Labels: improvements

#17 - Calculation of confidence intervals for PLS-model regression coefficients (jack knife)

Issue - State: closed - Opened by svkucheryavski almost 11 years ago
Labels: new feature

#12 - Add ALS baseline correction method

Issue - State: closed - Opened by svkucheryavski about 11 years ago - 2 comments
Labels: new feature

#10 - Make "crossval" class-dependant method

Issue - State: closed - Opened by svkucheryavski about 11 years ago
Labels: improvements

#9 - Refactor code with classes "regmodel" and "classmodel"

Issue - State: closed - Opened by svkucheryavski about 11 years ago
Labels: improvements