Ecosyste.ms: Issues

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GitHub / stuntspt/structure_threader issues and pull requests

#42 - Field test for maverick

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#42 - Field test for maverick

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#41 - Bad pop and ind file tests

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#41 - Bad pop and ind file tests

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#40 - Test single and multiple K plots

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#40 - Test single and multiple K plots

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#39 - Test merger function for maverick

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#39 - Test merger function for maverick

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#38 - Update the docs with new ind file

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#38 - Update the docs with new ind file

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#37 - Update docs for maverick support

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#36 - Create binary file and update setup.py

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#36 - Create binary file and update setup.py

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#35 - Implement new plotter function using plotly

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#35 - Implement new plotter function using plotly

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#34 - Allow passing the mainparams argument

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#33 - Finish the merger function

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#31 - FastStructure should require either ind or pop file

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#30 - Pop and ind files should be made mutually exclusive

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#29 - Added sanity checks for pop and ind files

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#28 - Add option to provide Ind file (file containing individual names)

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment

#27 - Error catcher is not logging STDERR lines

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#26 - Plotter crashes if only one replicate is requested

Issue - State: closed - Opened by StuntsPT almost 8 years ago
Labels: bug

#24 - converting plink format to fastStructure format

Issue - State: closed - Opened by mjmontague about 8 years ago - 7 comments
Labels: duplicate, enhancement

#23 - Add a verification to see if 'popfile' exists and is a file to sanity checks.

Issue - State: closed - Opened by StuntsPT over 8 years ago - 2 comments

#22 - structplot.py fails when "USEPOPINFO" flag in structure is set

Issue - State: closed - Opened by StuntsPT over 8 years ago - 1 comment
Labels: bug

#21 - Needs a test suite!

Issue - State: closed - Opened by StuntsPT over 9 years ago - 1 comment
Labels: enhancement

#20 - Allow fastStructure runs to use .bed format too.

Issue - State: closed - Opened by StuntsPT over 9 years ago
Labels: enhancement, help wanted

#19 - The plot for maxK is not being drawn.

Issue - State: closed - Opened by StuntsPT over 9 years ago

#18 - Sort the individuals by population before sorting

Issue - State: closed - Opened by StuntsPT over 9 years ago - 4 comments
Labels: enhancement

#17 - We should add some helper scripts to install structure and fastsctucture.

Issue - State: closed - Opened by StuntsPT over 9 years ago - 1 comment
Labels: enhancement

#15 - Paths compliant with OS separators

Issue - State: closed - Opened by ODiogoSilva over 9 years ago
Labels: enhancement

#14 - Make the sanity checks a seperate module.

Issue - State: closed - Opened by StuntsPT over 9 years ago - 1 comment
Labels: enhancement

#13 - Evanno

Pull Request - State: closed - Opened by StuntsPT over 9 years ago

#12 - Structure_threader should support setup.py for easier installation

Issue - State: closed - Opened by StuntsPT over 9 years ago - 2 comments
Labels: enhancement

#11 - Structure_threader should plot the clustering graphs

Issue - State: closed - Opened by StuntsPT over 9 years ago - 3 comments
Labels: enhancement

#10 - faststructure should also be supported

Issue - State: closed - Opened by StuntsPT over 9 years ago - 3 comments
Labels: enhancement

#9 - Structure_threader should make the evanno test

Issue - State: closed - Opened by StuntsPT over 9 years ago - 1 comment
Labels: enhancement

#8 - Clean exit when forced to quit

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago

#7 - Added sanity check to number of threads

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago - 1 comment

#6 - Output routine

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago - 1 comment

#5 - Report errors

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago

#4 - Output directory routine

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago - 3 comments

#3 - Job list fix

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago

#2 - Replaced for loop with communicate()

Pull Request - State: closed - Opened by ODiogoSilva over 9 years ago - 1 comment

#1 - argparse addition

Pull Request - State: closed - Opened by Nymeria8 over 9 years ago