Ecosyste.ms: Issues

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GitHub / stuntspt/structure_threader issues and pull requests

#96 - multiple runs return identical likelihood

Issue - State: closed - Opened by andycrowl about 2 months ago - 6 comments

#96 - multiple runs return identical likelihood

Issue - State: open - Opened by andycrowl about 2 months ago - 5 comments

#95 - plink .bed .bim .fam formatting problem

Issue - State: closed - Opened by alleneli 10 months ago - 3 comments
Labels: question

#95 - plink .bed .bim .fam formatting problem

Issue - State: closed - Opened by alleneli 10 months ago - 3 comments
Labels: question

#94 - Error on running test data

Issue - State: open - Opened by konopinski about 1 year ago - 1 comment

#92 - 'Module Not Found' Error running fastStructure

Issue - State: closed - Opened by quinn-ca almost 2 years ago - 6 comments

#92 - 'Module Not Found' Error running fastStructure

Issue - State: closed - Opened by quinn-ca almost 2 years ago - 6 comments

#91 - Add a "plot order changer" function to the program

Issue - State: open - Opened by StuntsPT about 2 years ago
Labels: enhancement

#91 - Add a "plot order changer" function to the program

Issue - State: open - Opened by StuntsPT about 2 years ago
Labels: enhancement

#89 - ERROR: moving to final location failed

Issue - State: closed - Opened by thesnakeguy over 3 years ago - 10 comments

#89 - ERROR: moving to final location failed

Issue - State: closed - Opened by thesnakeguy over 3 years ago - 10 comments

#88 - Investigate pip3 failing to install on Windows

Issue - State: closed - Opened by StuntsPT over 4 years ago - 1 comment

#88 - Investigate pip3 failing to install on Windows

Issue - State: closed - Opened by StuntsPT over 4 years ago - 1 comment

#87 - Error running faststructure

Issue - State: closed - Opened by royfrancis over 4 years ago - 11 comments
Labels: question, upstream

#87 - Error running faststructure

Issue - State: closed - Opened by royfrancis over 4 years ago - 11 comments
Labels: question, upstream

#86 - ERROR running STRUCTURE in command line

Issue - State: closed - Opened by cahuparo about 5 years ago - 2 comments

#86 - ERROR running STRUCTURE in command line

Issue - State: closed - Opened by cahuparo about 5 years ago - 2 comments

#85 - structure_threader not using all available cores

Issue - State: closed - Opened by oospina over 5 years ago - 3 comments
Labels: question

#85 - structure_threader not using all available cores

Issue - State: closed - Opened by oospina over 5 years ago - 3 comments
Labels: question

#84 - Structure_threader issue

Issue - State: closed - Opened by Ram-Nagar over 5 years ago - 9 comments
Labels: question

#84 - Structure_threader issue

Issue - State: closed - Opened by Ram-Nagar over 5 years ago - 9 comments
Labels: question

#83 - plot function error

Issue - State: closed - Opened by peuclide over 5 years ago - 1 comment

#83 - plot function error

Issue - State: closed - Opened by peuclide over 5 years ago - 1 comment

#82 - structure_threader with multiple --extra_opts not working

Issue - State: closed - Opened by oviscanadensis almost 6 years ago - 4 comments

#82 - structure_threader with multiple --extra_opts not working

Issue - State: closed - Opened by oviscanadensis almost 6 years ago - 4 comments

#81 - structurethreader not multithreading

Issue - State: closed - Opened by jkreinz about 6 years ago - 1 comment
Labels: invalid

#81 - structurethreader not multithreading

Issue - State: closed - Opened by jkreinz about 6 years ago - 1 comment
Labels: invalid

#79 - Plotly. Font is deprecated

Issue - State: closed - Opened by 3nrique0 over 6 years ago - 3 comments
Labels: upstream

#79 - Plotly. Font is deprecated

Issue - State: closed - Opened by 3nrique0 over 6 years ago - 3 comments
Labels: upstream

#78 - Numpy error during MavericK normalization

Issue - State: closed - Opened by cathynewman over 6 years ago - 4 comments
Labels: enhancement

#77 - Using the "plot" function with MavericK output is not working

Issue - State: closed - Opened by StuntsPT over 6 years ago

#77 - Using the "plot" function with MavericK output is not working

Issue - State: closed - Opened by StuntsPT over 6 years ago

#76 - some problem with plotly

Issue - State: closed - Opened by mthon over 6 years ago - 9 comments

#76 - some problem with plotly

Issue - State: closed - Opened by mthon over 6 years ago - 9 comments

#74 - structure_threader problem with seed

Issue - State: closed - Opened by StuntsPT almost 7 years ago - 5 comments
Labels: bug

#74 - structure_threader problem with seed

Issue - State: closed - Opened by StuntsPT almost 7 years ago - 5 comments
Labels: bug

#72 - MavericK "outputLikelihood" should be merged

Issue - State: open - Opened by StuntsPT over 7 years ago
Labels: enhancement

#72 - MavericK "outputLikelihood" should be merged

Issue - State: open - Opened by StuntsPT over 7 years ago
Labels: enhancement

#71 - Update the docs with new functionality

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#71 - Update the docs with new functionality

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#70 - Provide an option to generate skeleton parameter files

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#70 - Provide an option to generate skeleton parameter files

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#69 - Improve plotting options

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#69 - Improve plotting options

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#66 - Problem wrapping MavericK when TI is turned off

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#66 - Problem wrapping MavericK when TI is turned off

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#65 - Wrapping MavericK under windows fails

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#65 - Wrapping MavericK under windows fails

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#64 - Reorganize and improve installation instructions

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#64 - Reorganize and improve installation instructions

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#63 - Improve "BestK" presentation for MavericK

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#63 - Improve "BestK" presentation for MavericK

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#62 - Structure_threader may be treating analyses like a black box

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#62 - Structure_threader may be treating analyses like a black box

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#61 - Improve field tests to try more parameter variations

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#61 - Improve field tests to try more parameter variations

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#60 - Fix Structure href.

Pull Request - State: closed - Opened by briantrice over 7 years ago - 1 comment

#59 - Problem with "plot prefix"

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#59 - Problem with "plot prefix"

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: enhancement

#58 - Population delimiters not showing with --use-ind-labels option

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug

#58 - Population delimiters not showing with --use-ind-labels option

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug

#57 - "faststructure" should be spelled with only lowecase in the "-f" plot option

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#57 - "faststructure" should be spelled with only lowecase in the "-f" plot option

Issue - State: closed - Opened by StuntsPT over 7 years ago - 1 comment
Labels: enhancement

#56 - K=1 is being plotted and Structure_threader throws an error

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#56 - K=1 is being plotted and Structure_threader throws an error

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#55 - Got this error today

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#55 - Got this error today

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#53 - Link when wrapping fastStructure

Issue - State: closed - Opened by StuntsPT over 7 years ago
Labels: bug

#52 - *Structure_threader* fails if "extraparams" is not found

Issue - State: closed - Opened by StuntsPT over 7 years ago

#51 - Plotly output filenames should have ".html" suffix

Issue - State: closed - Opened by StuntsPT over 7 years ago

#51 - Plotly output filenames should have ".html" suffix

Issue - State: closed - Opened by StuntsPT over 7 years ago

#50 - problems running Structure_threader - Structure path problems with "c:\programfiles (x86)\..."

Issue - State: closed - Opened by Sparassus over 7 years ago - 23 comments
Labels: question

#50 - problems running Structure_threader - Structure path problems with "c:\programfiles (x86)\..."

Issue - State: closed - Opened by Sparassus over 7 years ago - 23 comments
Labels: question

#49 - Using a popfile is not woring as expected

Issue - State: closed - Opened by StuntsPT over 7 years ago

#49 - Using a popfile is not woring as expected

Issue - State: closed - Opened by StuntsPT over 7 years ago

#48 - Use logging for terminal output

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#48 - Use logging for terminal output

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#47 - Retrieve bestk at the end of the run

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#46 - MavericK field test is silently broken.

Issue - State: closed - Opened by StuntsPT over 7 years ago

#46 - MavericK field test is silently broken.

Issue - State: closed - Opened by StuntsPT over 7 years ago

#45 - Migrate from matplotlib to plotly for plot generation

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#45 - Migrate from matplotlib to plotly for plot generation

Issue - State: closed - Opened by ODiogoSilva over 7 years ago

#44 - Create a helper script to install MavericK from source.

Issue - State: closed - Opened by StuntsPT over 7 years ago

#44 - Create a helper script to install MavericK from source.

Issue - State: closed - Opened by StuntsPT over 7 years ago