stschiff/sequenceTools issues and pull requests

#34 - Multiple population names

Issue - State: closed - Opened by TCLamnidis 11 months ago - 2 comments

#33 - Release for 1.5.3.1

Issue - State: closed - Opened by pur80a over 1 year ago - 4 comments

#32 - fails to build in Stackage Nightly

Issue - State: closed - Opened by juhp over 1 year ago - 5 comments

#31 - please add .cabal metadata github links

Issue - State: closed - Opened by juhp over 1 year ago - 1 comment

#30 - pileupCaller: WrongInputOrderException "ordering violated:

Issue - State: closed - Opened by nullquine over 1 year ago - 3 comments

#29 - pileupCaller: cannot parse read base string whith reference skip

Issue - State: closed - Opened by mscbig about 2 years ago - 4 comments

#28 - GHC/stack/SequenceTools issue -- can't install

Issue - State: closed - Opened by batelz over 2 years ago - 9 comments

#27 - Filtering lower-case letters from pileup?

Issue - State: open - Opened by stschiff over 2 years ago

#26 - pileupCaller only outputing missing data in genofile

Issue - State: closed - Opened by mscbig over 2 years ago - 3 comments

#25 - PileupCaller calls "missing" when there should be sufficient reads

Issue - State: closed - Opened by stschiff almost 3 years ago - 2 comments

#24 - Single-strand mode is not appropriate with unmerged R2 reads

Issue - State: open - Opened by stschiff almost 3 years ago - 1 comment

#23 - Invalid option `-p'

Issue - State: closed - Opened by npsonis almost 3 years ago - 8 comments

#22 - parsing error

Issue - State: closed - Opened by npsonis about 3 years ago - 9 comments

#21 - added basic CI gh-action

Pull Request - State: closed - Opened by stschiff about 3 years ago

#20 - SeqFormatException "Error while parsing:Failed reading

Issue - State: closed - Opened by idiltac about 3 years ago - 1 comment

#19 - Add plink support

Pull Request - State: closed - Opened by teepean over 3 years ago - 8 comments

#18 - Add plink support (first attempt)

Pull Request - State: closed - Opened by teepean over 3 years ago - 3 comments

#17 - Plink output to pileupCaller?

Issue - State: closed - Opened by teepean over 3 years ago - 1 comment

#15 - SeqFormatException

Issue - State: open - Opened by KovachLab about 4 years ago - 3 comments
Labels: enhancement

#14 - Fix Conda Badge

Pull Request - State: closed - Opened by apeltzer over 4 years ago

#13 - Static artifact direct

Pull Request - State: closed - Opened by sequencetoolsconda over 4 years ago - 5 comments

#12 - Static artifact

Pull Request - State: closed - Opened by sequencetoolsconda over 4 years ago - 1 comment

#11 - Add option to estimate heterozygosity with error bars

Issue - State: closed - Opened by stschiff over 4 years ago
Labels: wontfix

#10 - Prelude.read:no parse Error

Issue - State: closed - Opened by antmarge over 4 years ago - 4 comments

#9 - Add option for single copy chromosome calls

Issue - State: open - Opened by stschiff over 4 years ago
Labels: enhancement

#8 - pileupCaller: SeqFormatException "Error while parsing

Issue - State: closed - Opened by Anahit19 almost 5 years ago - 9 comments

#7 - Add bioconda recipe for sequenceTools

Issue - State: closed - Opened by sc13-bioinf almost 5 years ago - 5 comments
Labels: enhancement, help wanted

#6 - Bioconda recipe needs updating to release 1.4.0

Issue - State: closed - Opened by TCLamnidis about 5 years ago - 1 comment

#5 - Does pileupCaller output reference bases?

Issue - State: closed - Opened by Arkkienkeli over 5 years ago - 4 comments

#4 - Rs values missing from pileupCaller output

Issue - State: closed - Opened by teepean almost 6 years ago - 4 comments

#3 - pileupCaller: ParsingError

Issue - State: closed - Opened by SRgen almost 6 years ago - 7 comments

#2 - Bioconda Package / Update README?

Issue - State: closed - Opened by apeltzer over 6 years ago - 3 comments

#1 - Issue with pileupCaller

Issue - State: closed - Opened by mnievesc over 6 years ago - 3 comments

Ecosyste.ms: Issues

GitHub / stschiff/sequenceTools issues and pull requests