Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / stschiff/msmc2 issues and pull requests

#54 - strange result about the estimated cross-coalescence rate

Issue - State: open - Opened by liuqi-C about 1 year ago

#53 - Haploid problem

Issue - State: open - Opened by cfz1998 over 1 year ago - 3 comments

#52 - using phased-vcf file as input for MSMC2

Issue - State: open - Opened by Niloofar-Alaei over 1 year ago - 2 comments

#51 - 2 vs. 4 haplotype results

Issue - State: open - Opened by dmartche over 1 year ago - 2 comments

#50 - Question about phasing and the cross-coalescence rate

Issue - State: open - Opened by luisamarins over 1 year ago - 1 comment

#49 - Population selections

Issue - State: open - Opened by cnxiaobo94 over 1 year ago - 5 comments

#48 - installation error

Issue - State: open - Opened by cnxiaobo94 over 1 year ago - 6 comments

#47 - MSMC2 -I Range violation

Issue - State: open - Opened by bxZhang996 almost 2 years ago - 4 comments

#46 - msmc2 install failed

Issue - State: closed - Opened by jayramr almost 2 years ago - 15 comments

#45 - conda package for msmc2

Issue - State: closed - Opened by jayramr almost 2 years ago - 1 comment

#44 - Cross-coalescence rate in multiple populations

Issue - State: closed - Opened by JohnsonStev almost 2 years ago - 1 comment

#43 - Unable to run msmc2 on a single sample

Issue - State: closed - Opened by Buffan3369 almost 2 years ago - 4 comments

#42 - Out of memory issue with Cross Coalescent and weird RCC graph

Issue - State: closed - Opened by DuttaAnik almost 2 years ago

#41 - wrong version displayed

Issue - State: closed - Opened by EricDeveaud about 2 years ago - 2 comments

#40 - msmc2 installation problem

Issue - State: closed - Opened by 5681 about 2 years ago - 3 comments

#39 - Problem running msmc2 with more than one scaffold

Issue - State: closed - Opened by micadiz over 2 years ago - 2 comments

#38 - Cross-coalescence rate query

Issue - State: closed - Opened by shaferab over 2 years ago - 10 comments

#37 - Phase without reference panel

Issue - State: closed - Opened by mbrieuc almost 3 years ago - 1 comment

#35 - Unexpected '.' when converting from type char[] to type ulong

Issue - State: closed - Opened by timmci almost 3 years ago - 6 comments

#34 - minimum covergae for running MSMC2

Issue - State: closed - Opened by AliceIob almost 3 years ago - 1 comment

#33 - Problems when install the msmc2

Issue - State: closed - Opened by 7melo7 about 3 years ago - 5 comments

#32 - confusion with running cross-population annalysis

Issue - State: closed - Opened by Aannaw about 3 years ago - 1 comment

#31 - number haplotypes

Issue - State: closed - Opened by kmanoharan01 over 3 years ago - 2 comments

#30 - Ne explodes close to the present

Issue - State: closed - Opened by evoecogen-git over 3 years ago - 8 comments

#29 - MSMC2: Cross Coalescent divergence time

Issue - State: closed - Opened by kmanoharan01 over 3 years ago - 12 comments

#28 - Number of populations

Issue - State: closed - Opened by kmanoharan01 over 3 years ago - 2 comments

#27 - msmc

Issue - State: closed - Opened by cfhj over 3 years ago - 1 comment

#26 - issues with scaffold-level data

Issue - State: closed - Opened by selasphoruskershaw over 3 years ago

#25 - msmc-input

Issue - State: closed - Opened by cfz1998 almost 4 years ago - 1 comment

#24 - Odd relative cross-coalescence rate for simulated data

Issue - State: closed - Opened by marqueda over 4 years ago - 3 comments

#23 - Affect of rho/mu ratio in reconstructing histories

Issue - State: closed - Opened by fredericlabbe over 5 years ago - 1 comment

#22 - The abonormal values of RCCR when estimating the population splits with MSMC2

Issue - State: closed - Opened by Yun-HongWu over 5 years ago - 1 comment

#21 - error msmc2 :estimating population separation history

Issue - State: closed - Opened by ncnlll over 5 years ago - 6 comments

#20 - Decode output issue

Issue - State: closed - Opened by marqueda over 5 years ago - 10 comments

#19 - range violation error when providing multiple input files

Issue - State: closed - Opened by KHanghoj over 5 years ago - 1 comment

#18 - Tutorial: unrecognized option

Issue - State: closed - Opened by pstokespmb almost 6 years ago - 1 comment

#17 - Tutorial: output looks different

Issue - State: closed - Opened by pstokespmb almost 6 years ago - 3 comments

#16 - The much higher Ne results generated by MSMC2 than that in PSMC

Issue - State: closed - Opened by yongzhiyang2012 almost 6 years ago - 2 comments

#15 - msmc2 -I 4,5,6,7 error

Issue - State: closed - Opened by SC-Duan about 6 years ago - 7 comments

#14 - multi threads

Issue - State: closed - Opened by laurabuggiotti about 6 years ago - 3 comments

#13 - number of haplotypes

Issue - State: closed - Opened by laurabuggiotti over 6 years ago - 5 comments

#12 - citation of msmc2

Issue - State: closed - Opened by swamidass over 6 years ago - 1 comment

#11 - failed to allocate space for block data

Issue - State: closed - Opened by conniecl almost 7 years ago - 3 comments

#10 - Population Structure

Issue - State: closed - Opened by stsmall about 7 years ago - 1 comment

#9 - Relative cross coalescence rate larger than 1

Issue - State: closed - Opened by silvewheat over 7 years ago - 3 comments

#8 - Likelihood sometimes decreases?

Issue - State: closed - Opened by bredelings over 7 years ago - 6 comments

#7 - failure to run msmc2 on single sample

Issue - State: closed - Opened by vicenciooostra almost 8 years ago - 7 comments

#6 - How to deal with InDels?

Issue - State: closed - Opened by econdesousa about 8 years ago - 3 comments

#5 - Multiple Chromosome Problems

Issue - State: closed - Opened by econdesousa about 8 years ago - 1 comment

#4 - phase genotype without reference panel

Issue - State: closed - Opened by biozzq over 8 years ago

#3 - Excessive memory usage

Issue - State: closed - Opened by feilchenfeldt over 8 years ago - 7 comments

#2 - fixing mutation rate with -m flag

Issue - State: closed - Opened by stsmall over 9 years ago - 5 comments
Labels: question

#1 - msmc2 compilation problem

Issue - State: closed - Opened by potw over 9 years ago - 1 comment
Labels: bug