Ecosyste.ms: Issues

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GitHub / stschiff/msmc issues and pull requests

#56 - using the phased-vcf files as input for MSMC2

Issue - State: closed - Opened by Niloofar-Alaei about 1 year ago - 1 comment

#54 - AssertionError while using generate_multihetsep.py

Issue - State: closed - Opened by Luker121 almost 2 years ago - 1 comment

#53 - Unexpected 'g' when converting from type char[] to type ulong

Issue - State: closed - Opened by hyperoplus about 2 years ago - 7 comments

#51 - Error in installing software

Issue - State: closed - Opened by suying77 over 2 years ago

#50 - MSMC2- install error

Issue - State: closed - Opened by lwlive about 3 years ago - 2 comments

#48 - "The sequence "chr1" was not found"

Issue - State: closed - Opened by selasphoruskershaw over 3 years ago - 1 comment

#47 - precompiled binaries not working on macOS Catalina

Issue - State: closed - Opened by jssdenton about 4 years ago - 1 comment

#46 - powell exceeding maximum iterations

Issue - State: closed - Opened by dieunelderilus about 5 years ago - 6 comments

#45 - How to install MSMC

Issue - State: closed - Opened by WANGyujian123 about 5 years ago - 1 comment

#44 - trying to replicate Fig2 of Schiffels & Durbin (2014)

Issue - State: closed - Opened by andrewkern about 5 years ago - 6 comments

#43 - Abnormal results of MSMC, and need help ~

Issue - State: closed - Opened by Yun-HongWu about 5 years ago - 2 comments

#42 - Effect of introgression and selfing for estimation of population split

Issue - State: closed - Opened by oushujun almost 6 years ago - 1 comment

#41 - decode time units

Issue - State: closed - Opened by arundurvasula almost 6 years ago - 3 comments

#40 - MSMC error

Issue - State: closed - Opened by kentsing almost 6 years ago - 12 comments

#39 - MSMC running with the divergent individuals

Issue - State: closed - Opened by yongzhiyang2012 almost 6 years ago - 1 comment

#38 - install error

Issue - State: closed - Opened by Sh1ne111 almost 6 years ago - 1 comment

#37 - running msmc without final result

Issue - State: closed - Opened by rxw125 almost 6 years ago - 1 comment

#36 - error running msmc

Issue - State: closed - Opened by JPingAMMS about 6 years ago - 2 comments

#35 - another Segmentation Fault

Issue - State: closed - Opened by mike2vandy about 6 years ago - 1 comment

#34 - AssertError bootstrap

Issue - State: closed - Opened by bioinformaticspcj about 6 years ago - 2 comments

#33 - Segfault on your test file in the guide

Issue - State: closed - Opened by fishextinction over 6 years ago - 4 comments

#32 - msmc error

Issue - State: closed - Opened by yuntwang over 6 years ago - 2 comments

#31 - Segmentation Falt on OSX (Mac)

Issue - State: closed - Opened by swamidass over 6 years ago - 3 comments

#29 - different results between MSMC and MSMC2

Issue - State: closed - Opened by JiangYuLab almost 7 years ago - 2 comments

#28 - Segmentation fault for running barley sample

Issue - State: closed - Opened by lilei1 about 7 years ago - 6 comments

#27 - Can I use only sequence data in fasta format to run MSMC?

Issue - State: closed - Opened by YangChaoCN over 7 years ago - 1 comment

#26 - remove repeatmask region

Issue - State: closed - Opened by wlz0726 over 7 years ago - 2 comments

#25 - Deal unphased vcf

Issue - State: closed - Opened by SC-Duan over 7 years ago - 4 comments

#24 - Can MSMC deal unphased haplotypes?

Issue - State: closed - Opened by SC-Duan over 7 years ago

#23 - resequencing data of non-model diploid organism

Issue - State: closed - Opened by xier92 over 7 years ago - 2 comments

#22 - Couple issues understanding decode output

Issue - State: closed - Opened by jthuff almost 8 years ago - 5 comments

#21 - Synthetic Haplotypes

Issue - State: closed - Opened by LiverpoolHarry about 8 years ago - 1 comment

#20 - question on analysis with whole genome data

Issue - State: closed - Opened by zhyanlin about 8 years ago

#19 - Questions of using MSMC decode on multiple haplotypes

Issue - State: closed - Opened by muhuaw about 8 years ago - 4 comments

#18 - should I keep unphased sites?

Issue - State: closed - Opened by hhu1 over 8 years ago - 1 comment
Labels: question

#17 - Gene flow estimation with 2 haplotypes?

Issue - State: closed - Opened by arundurvasula over 8 years ago - 4 comments

#16 - Segmentation fault

Issue - State: closed - Opened by sailgu almost 9 years ago - 5 comments

#15 - Segmentation fault with large number of scaffolds

Issue - State: closed - Opened by frl1 almost 9 years ago - 4 comments

#14 - Problems compiling on RHEL 6.4

Issue - State: closed - Opened by rvmoye almost 9 years ago - 1 comment

#13 - Doesn't multithread

Issue - State: closed - Opened by alanrogers about 9 years ago - 1 comment
Labels: question

#12 - Won't compile on 32-bit linux.

Issue - State: closed - Opened by alanrogers about 9 years ago - 3 comments
Labels: bug

#11 - memory consumption of MSMC

Issue - State: closed - Opened by hhu1 about 9 years ago - 2 comments
Labels: question

#10 - mappability mask file

Issue - State: closed - Opened by BegonaMartinez about 9 years ago - 1 comment
Labels: question

#9 - MSMC with genomes in multiple scaffolds, not in chromosomes

Issue - State: closed - Opened by BegonaMartinez about 9 years ago - 4 comments
Labels: feature request

#8 - New Error installing from source

Issue - State: closed - Opened by potw about 9 years ago - 5 comments
Labels: bug

#7 - msmc is too restrictive WRT chromosome IDs

Issue - State: closed - Opened by mhinsch over 9 years ago - 1 comment

#6 - msmc can't handle empty .conf files

Issue - State: closed - Opened by mhinsch over 9 years ago - 1 comment
Labels: feature request

#5 - error in tools/generate_multihetsep.py

Issue - State: closed - Opened by cxue over 9 years ago - 1 comment

#3 - errors with installing from source

Issue - State: closed - Opened by singhal almost 10 years ago - 3 comments

#2 - CG_caller update

Pull Request - State: closed - Opened by songsy almost 10 years ago

#1 - Update cgCaller.py

Pull Request - State: closed - Opened by songsy almost 10 years ago - 2 comments