Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / stjudecloud/workflows issues and pull requests
#100 - Fix GitHub Actions badge
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
#100 - Fix GitHub Actions badge
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
#99 - feat: STAR rewrite
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#99 - feat: STAR rewrite
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#98 - feat(qc): Global Phred scores
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 3 comments
#98 - feat(qc): Global Phred scores
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 3 comments
#97 - style: sort imports
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#97 - style: sort imports
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#96 - WDL/1.1
Issue -
State: closed - Opened by adthrasher over 1 year ago
#96 - WDL/1.1
Issue -
State: closed - Opened by adthrasher over 1 year ago
#95 - style: reorder WDL sections
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#95 - style: reorder WDL sections
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#94 - feat: Style Guide and Best Practices confirmity
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 2 comments
#94 - feat: Style Guide and Best Practices confirmity
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 2 comments
#93 - feat: add subsampling option to QC and rnaseq-fastq
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#93 - feat: add subsampling option to QC and rnaseq-fastq
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#92 - feat: use samtools collate and fastq instead of picard
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 1 comment
#92 - feat: use samtools collate and fastq instead of picard
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 1 comment
#91 - feat(QC): Mark duplicates
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#91 - feat(QC): Mark duplicates
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#90 - feat: put strandedness value into HTSeq file name
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 1 comment
#90 - feat: put strandedness value into HTSeq file name
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 1 comment
#89 - docs: add template tasks to guide style
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 9 comments
#89 - docs: add template tasks to guide style
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 9 comments
#88 - investigate appropriate `disk_size`s
Issue -
State: open - Opened by a-frantz over 1 year ago
- 1 comment
#88 - investigate appropriate `disk_size`s
Issue -
State: open - Opened by a-frantz over 1 year ago
- 1 comment
#87 - rnaseq-standard refactor
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 4 comments
#87 - rnaseq-standard refactor
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 4 comments
#86 - Code cleanup
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#86 - Code cleanup
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#85 - Coverage analysis
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#85 - Coverage analysis
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
#84 - Modularize QC
Issue -
State: closed - Opened by a-frantz over 1 year ago
- 2 comments
Labels: enhancement
#84 - Modularize QC
Issue -
State: closed - Opened by a-frantz over 1 year ago
- 2 comments
Labels: enhancement
#83 - Kraken2
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 1 comment
#83 - Kraken2
Pull Request -
State: closed - Opened by a-frantz over 1 year ago
- 1 comment
#82 - ci: adds s to heads for branch tag conditional
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#82 - ci: adds s to heads for branch tag conditional
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#81 - ci: correct branch name in tagging condition
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#81 - ci: correct branch name in tagging condition
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#80 - Stage changes for main rename
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
- 1 comment
#80 - Stage changes for main rename
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
- 1 comment
#79 - Docker Build Speed Up
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#79 - Docker Build Speed Up
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#78 - Cell Ranger updates
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
- 3 comments
#78 - Cell Ranger updates
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
- 3 comments
#77 - ci: updates action names for external observability
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#77 - ci: updates action names for external observability
Pull Request -
State: closed - Opened by kevin-benton over 1 year ago
#76 - Prefix bamtofastq call since we are using the cell ranger included version
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
#76 - Prefix bamtofastq call since we are using the cell ranger included version
Pull Request -
State: closed - Opened by adthrasher over 1 year ago
#75 - Multiqc refactor
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
#75 - Multiqc refactor
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
#74 - Docker refactor and code cleanup
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 7 comments
#74 - Docker refactor and code cleanup
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 7 comments
#73 - Name sort
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 8 comments
Labels: enhancement
#73 - Name sort
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 8 comments
Labels: enhancement
#72 - Replace qualimap
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 2 comments
#72 - Replace qualimap
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 2 comments
#71 - Streamline
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
#71 - Streamline
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
#70 - ci updates
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 16 comments
#70 - ci updates
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
- 16 comments
#69 - feat: compute and output md5 checksum for all BAM alignment workflows
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
#69 - feat: compute and output md5 checksum for all BAM alignment workflows
Pull Request -
State: closed - Opened by a-frantz almost 2 years ago
#68 - Update cellranger docker image
Pull Request -
State: closed - Opened by adthrasher about 2 years ago
#67 - [WIP] Integrate PEAseq paired-end mode for ChIP-Seq
Pull Request -
State: closed - Opened by adthrasher about 2 years ago
- 2 comments
#67 - [WIP] Integrate PEAseq paired-end mode for ChIP-Seq
Pull Request -
State: closed - Opened by adthrasher about 2 years ago
- 2 comments
#66 - Updated SEAseq util path to reflect change in the SEAseq repo
Pull Request -
State: closed - Opened by adthrasher about 2 years ago
#66 - Updated SEAseq util path to reflect change in the SEAseq repo
Pull Request -
State: closed - Opened by adthrasher about 2 years ago
#65 - Initial draft of Cell Ranger-based scRNA-Seq workflow.
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
#65 - Initial draft of Cell Ranger-based scRNA-Seq workflow.
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
#64 - Qc summary
Pull Request -
State: closed - Opened by a-frantz over 2 years ago
#64 - Qc summary
Pull Request -
State: closed - Opened by a-frantz over 2 years ago
#63 - Update WDL tasks to comply with dxCompiler restrictions
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
- 1 comment
#63 - Update WDL tasks to comply with dxCompiler restrictions
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
- 1 comment
#62 - Rename markdup output to final bam name
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
#62 - Rename markdup output to final bam name
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
#61 - Add optional check for VCF file integrity using bgzip -t
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
- 5 comments
#61 - Add optional check for VCF file integrity using bgzip -t
Pull Request -
State: closed - Opened by adthrasher over 2 years ago
- 5 comments
#60 - Chipseq seaseq
Pull Request -
State: closed - Opened by adthrasher almost 3 years ago
#60 - Chipseq seaseq
Pull Request -
State: closed - Opened by adthrasher almost 3 years ago
#59 - Use optional file argument directly
Pull Request -
State: closed - Opened by adthrasher almost 3 years ago
#59 - Use optional file argument directly
Pull Request -
State: closed - Opened by adthrasher almost 3 years ago
#58 - fix: replace all underscore suffixes with dot suffixes
Pull Request -
State: closed - Opened by a-frantz almost 3 years ago
- 3 comments
#58 - fix: replace all underscore suffixes with dot suffixes
Pull Request -
State: closed - Opened by a-frantz almost 3 years ago
- 3 comments
#57 - feat: bgzip check
Pull Request -
State: closed - Opened by a-frantz about 3 years ago
#57 - feat: bgzip check
Pull Request -
State: closed - Opened by a-frantz about 3 years ago
#56 - Add CI for checking all tasks pull current docker images
Issue -
State: closed - Opened by a-frantz about 3 years ago
#56 - Add CI for checking all tasks pull current docker images
Issue -
State: closed - Opened by a-frantz about 3 years ago
#55 - feat: add QC summary
Pull Request -
State: closed - Opened by a-frantz about 3 years ago
- 3 comments
#55 - feat: add QC summary
Pull Request -
State: closed - Opened by a-frantz about 3 years ago
- 3 comments
#54 - GH packages
Pull Request -
State: closed - Opened by a-frantz about 3 years ago
#54 - GH packages
Pull Request -
State: closed - Opened by a-frantz about 3 years ago
#53 - Initial draft of ChIP-Seq alignment workflow.
Pull Request -
State: closed - Opened by adthrasher about 3 years ago
- 2 comments
#53 - Initial draft of ChIP-Seq alignment workflow.
Pull Request -
State: closed - Opened by adthrasher about 3 years ago
- 2 comments
#52 - fix: Picard ValidateSamFile refactor
Pull Request -
State: closed - Opened by a-frantz over 3 years ago
- 1 comment
#52 - fix: Picard ValidateSamFile refactor
Pull Request -
State: closed - Opened by a-frantz over 3 years ago
- 1 comment
#51 - feat(qc): add option for ChIP-Seq
Pull Request -
State: closed - Opened by a-frantz over 3 years ago
#51 - feat(qc): add option for ChIP-Seq
Pull Request -
State: closed - Opened by a-frantz over 3 years ago
#50 - fix: Remove read_string() outputs
Pull Request -
State: closed - Opened by a-frantz over 3 years ago
- 1 comment