stjude/proteinpaint issues and pull requests

#1861 - default to group.mode = 'mutation' for matrix term group selector

Pull Request - State: closed - Opened by siosonel 3 months ago - 1 comment

#1860 - Allow showing scatter plot as a custom term option in Groups tab

Issue - State: closed - Opened by karishma-gangwani 3 months ago
Labels: enhancement

#1859 - Using custom variable after grouping as term1 breaks barchart

Issue - State: open - Opened by karishma-gangwani 3 months ago

#1859 - Using custom variable after grouping as term1 breaks barchart

Issue - State: open - Opened by karishma-gangwani 3 months ago

#1859 - Using custom variable after grouping as term1 breaks barchart

Issue - State: closed - Opened by karishma-gangwani 3 months ago

#1858 - numeric termsetting CI should cover survival term, based on recent changes of allowing survival in matrix

Issue - State: closed - Opened by xzhou82 3 months ago

#1858 - numeric termsetting CI should cover survival term, based on recent changes of allowing survival in matrix

Issue - State: closed - Opened by xzhou82 3 months ago

#1858 - numeric termsetting CI should cover survival term, based on recent changes of allowing survival in matrix

Issue - State: closed - Opened by xzhou82 3 months ago

#1857 - fix: filter0 is passed to violin request and improve to enable type c…

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1857 - fix: filter0 is passed to violin request and improve to enable type c…

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1857 - fix: filter0 is passed to violin request and improve to enable type c…

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1856 - violin request ignores filter0 and is incorrectly typed

Issue - State: closed - Opened by xzhou82 3 months ago

#1856 - violin request ignores filter0 and is incorrectly typed

Issue - State: closed - Opened by xzhou82 3 months ago

#1856 - violin request ignores filter0 and is incorrectly typed

Issue - State: closed - Opened by xzhou82 3 months ago

#1855 - New GDC example in the disco app card

Pull Request - State: closed - Opened by creilly8 3 months ago

#1855 - New GDC example in the disco app card

Pull Request - State: closed - Opened by creilly8 3 months ago

#1855 - New GDC example in the disco app card

Pull Request - State: closed - Opened by creilly8 3 months ago

#1854 - set "browser" option in front/package.json

Pull Request - State: closed - Opened by siosonel 3 months ago

#1854 - set "browser" option in front/package.json

Pull Request - State: closed - Opened by siosonel 3 months ago

#1854 - set "browser" option in front/package.json

Pull Request - State: closed - Opened by siosonel 3 months ago

#1853 - Update file extension on import statement

Pull Request - State: closed - Opened by creilly8 3 months ago

#1853 - Update file extension on import statement

Pull Request - State: closed - Opened by creilly8 3 months ago

#1853 - Update file extension on import statement

Pull Request - State: closed - Opened by creilly8 3 months ago

#1852 - matrix: group.mode value is expression or missing. find a way to assign mutation as value

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1852 - matrix: group.mode value is expression or missing. find a way to assign mutation as value

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1851 - Add `dictionary variables` to scatter plot app card

Pull Request - State: closed - Opened by creilly8 3 months ago

#1851 - Add `dictionary variables` to scatter plot app card

Pull Request - State: closed - Opened by creilly8 3 months ago

#1850 - bug fix for convert2caseId

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1850 - bug fix for convert2caseId

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1850 - bug fix for convert2caseId

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1849 - hiercluster: enable clicking on geneExpression clustering group label

Issue - State: closed - Opened by xzhou82 3 months ago

#1849 - hiercluster: enable clicking on geneExpression clustering group label

Issue - State: closed - Opened by xzhou82 3 months ago

#1849 - hiercluster: enable clicking on geneExpression clustering group label

Issue - State: closed - Opened by xzhou82 3 months ago

#1848 - app drawer: add gdc example to disco card

Issue - State: closed - Opened by xzhou82 3 months ago

#1848 - app drawer: add gdc example to disco card

Issue - State: closed - Opened by xzhou82 3 months ago

#1848 - app drawer: add gdc example to disco card

Issue - State: closed - Opened by xzhou82 3 months ago

#1847 - adding term to hiercluster group is limited by dataType

Pull Request - State: closed - Opened by congyu-lu 3 months ago - 2 comments

#1847 - adding term to hiercluster group is limited by dataType

Pull Request - State: closed - Opened by congyu-lu 3 months ago - 2 comments

#1847 - adding term to hiercluster group is limited by dataType

Pull Request - State: closed - Opened by congyu-lu 3 months ago - 2 comments

#1846 - New `Data Matrix` and `Gene Expression` app drawer cards

Pull Request - State: closed - Opened by creilly8 3 months ago - 1 comment

#1846 - New `Data Matrix` and `Gene Expression` app drawer cards

Pull Request - State: closed - Opened by creilly8 3 months ago - 1 comment

#1846 - New `Data Matrix` and `Gene Expression` app drawer cards

Pull Request - State: closed - Opened by creilly8 3 months ago - 1 comment

#1845 - samplescatter: gdc gene exp doesn't work

Issue - State: closed - Opened by xzhou82 3 months ago

#1845 - samplescatter: gdc gene exp doesn't work

Issue - State: closed - Opened by xzhou82 3 months ago

#1845 - samplescatter: gdc gene exp doesn't work

Issue - State: closed - Opened by xzhou82 3 months ago

#1844 - fixed end user note

Pull Request - State: closed - Opened by airenzp 3 months ago

#1843 - app drawer: "Scatter Plot" card refactor

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1843 - app drawer: "Scatter Plot" card refactor

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1843 - app drawer: "Scatter Plot" card refactor

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1842 - When only one genome available, print to the left of the search bar i…

Pull Request - State: closed - Opened by creilly8 3 months ago

#1842 - When only one genome available, print to the left of the search bar i…

Pull Request - State: closed - Opened by creilly8 3 months ago

#1841 - termdb: resolve the "Load top term" button

Issue - State: open - Opened by xzhou82 3 months ago

#1841 - termdb: resolve the "Load top term" button

Issue - State: open - Opened by xzhou82 3 months ago

#1841 - termdb: resolve the "Load top term" button

Issue - State: open - Opened by xzhou82 3 months ago

#1840 - hiercluster: validate and reject incompatible terms to be added to clustering groups

Issue - State: closed - Opened by xzhou82 3 months ago

#1840 - hiercluster: validate and reject incompatible terms to be added to clustering groups

Issue - State: closed - Opened by xzhou82 3 months ago

#1840 - hiercluster: validate and reject incompatible terms to be added to clustering groups

Issue - State: closed - Opened by xzhou82 3 months ago

#1839 - app drawer: "Gene expression clustering" card

Issue - State: closed - Opened by xzhou82 3 months ago

#1839 - app drawer: "Gene expression clustering" card

Issue - State: closed - Opened by xzhou82 3 months ago

#1839 - app drawer: "Gene expression clustering" card

Issue - State: closed - Opened by xzhou82 3 months ago

#1838 - app drawer: add "Data matrix" card

Issue - State: closed - Opened by xzhou82 3 months ago

#1838 - app drawer: add "Data matrix" card

Issue - State: closed - Opened by xzhou82 3 months ago

#1838 - app drawer: add "Data matrix" card

Issue - State: closed - Opened by xzhou82 3 months ago

#1837 - clarify purpose of server/test/serverconfig.json by adding a "comment" in it

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1837 - clarify purpose of server/test/serverconfig.json by adding a "comment" in it

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1837 - clarify purpose of server/test/serverconfig.json by adding a "comment" in it

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1835 - genesetEdit ui refactor to show additional gene query params in submenus

Pull Request - State: closed - Opened by creilly8 3 months ago

#1834 - matrix integration test to cover gene exp and survival

Issue - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1833 - singlecell: limit DE gene table width

Issue - State: closed - Opened by xzhou82 3 months ago

#1833 - singlecell: limit DE gene table width

Issue - State: closed - Opened by xzhou82 3 months ago

#1833 - singlecell: limit DE gene table width

Issue - State: closed - Opened by xzhou82 3 months ago

#1829 - read login information in the index to load different intros

Pull Request - State: closed - Opened by airenzp 3 months ago

#1829 - read login information in the index to load different intros

Pull Request - State: closed - Opened by airenzp 3 months ago

#1826 - Fix for failing CI test

Pull Request - State: open - Opened by creilly8 3 months ago

#1825 - improve oncomatrix non-ci test to include gene expression and survival, and CNV-only cohort

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1824 - Scatter sample size read is not the area now, size x size is the area.

Pull Request - State: closed - Opened by airenzp 3 months ago

#1823 - issue with downloading geneVariant data

Issue - State: open - Opened by xzhou82 3 months ago

#1822 - matrix: enable Edit option for geneVariant rows

Pull Request - State: closed - Opened by congyu-lu 3 months ago - 2 comments

#1821 - use setTermBins to set term bins, and fix the summary plot error

Pull Request - State: closed - Opened by congyu-lu 3 months ago

#1820 - for gdc age variable value, convert from days to decimal years

Issue - State: open - Opened by xzhou82 3 months ago

#1819 - Added choice to hide samples table in the singleCellPlot

Pull Request - State: closed - Opened by airenzp 3 months ago

#1818 - Downloading geneExpression and metaboliteIntensity data is allowed in the download use case

Pull Request - State: closed - Opened by airenzp 3 months ago

#1817 - oncomatrix non-ci test cover gene exp and survival terms

Issue - State: open - Opened by xzhou82 3 months ago

#1816 - matrix: enable `Edit` option for geneVariant rows

Issue - State: closed - Opened by xzhou82 3 months ago

#1815 - In single cell plot displayed samples using a datalist

Pull Request - State: closed - Opened by airenzp 3 months ago

#1814 - Fix client tsc

Pull Request - State: closed - Opened by siosonel 3 months ago

#1813 - Move header from `app.js` and create publications button

Pull Request - State: closed - Opened by creilly8 3 months ago

#1812 - geneVariant edit UI improvements and regression support

Pull Request - State: closed - Opened by gavrielm 3 months ago - 2 comments

#1811 - Reset the host back to original server if host argument is set in run…

Pull Request - State: closed - Opened by creilly8 3 months ago

#1810 - Gdc gsea2

Pull Request - State: closed - Opened by robinpaul85 3 months ago

#1809 - Show citation for survivorship portal in dataset button.

Pull Request - State: closed - Opened by creilly8 3 months ago - 3 comments

#1808 - Hier cluster missing term type

Pull Request - State: closed - Opened by congyu-lu 3 months ago

#1807 - Support overall survival data from gdc

Pull Request - State: closed - Opened by xzhou82 3 months ago - 1 comment

#1806 - mass app to apply environment-level debug flag at `app.opts.debug:boolean`

Issue - State: closed - Opened by xzhou82 3 months ago

#1805 - gdc sc: clusters from multiple samples can be appended to DEgene dropdown

Issue - State: closed - Opened by xzhou82 3 months ago

#1804 - add survival term in gdc dictionary

Issue - State: closed - Opened by xzhou82 3 months ago

#1803 - Centralize client-side filter rehydration

Pull Request - State: closed - Opened by xzhou82 3 months ago

#1802 - Added button to open GSEA besides cluster selection

Pull Request - State: closed - Opened by airenzp 3 months ago

#1801 - Migrate genesearch to typescript

Pull Request - State: closed - Opened by creilly8 3 months ago

#1800 - Tentative implementation of gsea inside single-cell GDC app

Pull Request - State: closed - Opened by robinpaul85 3 months ago

GitHub / stjude/proteinpaint issues and pull requests