Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / stephenturner/qqman issues and pull requests
#72 - Bugfix: manhattan.R now indexes with BP, not SNP which should be an optional column
Pull Request -
State: open - Opened by samuelejones 7 months ago
#71 - Error in UseMethod("qq") : no applicable method for 'qq' applied
Issue -
State: open - Opened by littletiger311 7 months ago
#70 - Add posibility to control annotation font size.
Pull Request -
State: open - Opened by bartosz-kozak about 1 year ago
#69 - Update qqman.Rmd
Pull Request -
State: closed - Opened by smasongarrison about 1 year ago
- 1 comment
#68 - x ticks not in the center of chromosome
Issue -
State: open - Opened by zpliu1126 over 1 year ago
#67 - overlap labels in Manhattan plot
Issue -
State: open - Opened by catheriz over 1 year ago
#66 - Width of manhattan plot
Issue -
State: closed - Opened by neginmb over 3 years ago
#65 - Refactored using dplyr functions
Pull Request -
State: closed - Opened by calpan about 6 years ago
- 1 comment
#64 - make annotatePval and annotateTop work with logp=FALSE
Pull Request -
State: closed - Opened by timflutre over 6 years ago
- 2 comments
#63 - Add flag to control annotation text size
Issue -
State: closed - Opened by oyhel over 6 years ago
#62 - Column CHR not found!
Issue -
State: closed - Opened by geneticsmcgill over 6 years ago
- 4 comments
#61 - Increase font size of annotation
Issue -
State: closed - Opened by jsreddy82 almost 7 years ago
- 2 comments
#60 - Error due to very very small and/or NA P values
Issue -
State: closed - Opened by zjuwhw almost 7 years ago
- 1 comment
#59 - Error: need finite 'ylim' values
Issue -
State: closed - Opened by edwardphineas about 7 years ago
- 2 comments
#58 - Something wrong in my dataset... but what?!
Issue -
State: closed - Opened by edwardphineas about 7 years ago
- 6 comments
#57 - trying to color qqplot points
Issue -
State: closed - Opened by elsadebecker about 7 years ago
- 1 comment
#56 - Question: how do I get all the chromosomes labels displayed on the x-axis?
Issue -
State: closed - Opened by swvanderlaan about 7 years ago
- 3 comments
#55 - Add a CITATION file and update DESCRIPTION
Pull Request -
State: closed - Opened by daissi over 7 years ago
- 1 comment
#54 - Possible to overlay manhattan plots?
Issue -
State: closed - Opened by jamesrpriest over 7 years ago
- 1 comment
#53 - Column CHR not found
Issue -
State: closed - Opened by reddamez over 7 years ago
- 3 comments
#52 - warning for annotatePval
Issue -
State: closed - Opened by ruoxichen5 over 7 years ago
- 3 comments
#51 - Error in plot.window(...) : need finite 'ylim' values
Issue -
State: closed - Opened by elcansaito over 7 years ago
- 2 comments
#50 - Update manhattan.R
Pull Request -
State: closed - Opened by GeneticResources over 7 years ago
- 3 comments
#49 - Warning: plot with P-values off by a factor of ~10
Issue -
State: closed - Opened by mrmousel over 7 years ago
- 3 comments
#48 - Manhattan plot of a subset of markers returns wrong bp positions
Issue -
State: closed - Opened by manuramon almost 8 years ago
- 1 comment
#47 - Feature Request: Annotate SNPs Set Font Size
Issue -
State: closed - Opened by ParsaAkbari almost 8 years ago
- 1 comment
#46 - suggestive and genome wide lines
Issue -
State: closed - Opened by mcoignet almost 8 years ago
- 5 comments
#45 - heatmap
Issue -
State: closed - Opened by mcoignet about 8 years ago
- 1 comment
#44 - highlighting issues
Issue -
State: closed - Opened by mcoignet about 8 years ago
- 1 comment
#43 - Bars or Lines instead of dots
Issue -
State: closed - Opened by Spendlove about 8 years ago
- 1 comment
#42 - Adding blank gaps between chromosomes to manhattan
Issue -
State: closed - Opened by vsvinti over 8 years ago
#41 - Gaps between Chromosomes
Issue -
State: closed - Opened by BOUDHRIOUA over 8 years ago
- 1 comment
#40 - Highlighting SNP using position instead of SNP characters.
Issue -
State: closed - Opened by NikoLichi over 8 years ago
- 2 comments
#39 - Manhattan plot with many scaffold numbers
Issue -
State: closed - Opened by chung154 over 8 years ago
- 2 comments
#38 - Highlight multiple different vectors and colour them differently?
Issue -
State: closed - Opened by evad80 over 8 years ago
- 5 comments
#37 - using multiple colours to highlight SNPs
Issue -
State: closed - Opened by EllaBowles over 8 years ago
- 1 comment
#36 - Draw a vertical line on GWAS plot
Issue -
State: closed - Opened by ubs717 almost 9 years ago
- 1 comment
#35 - Allow character values for chromosomes
Issue -
State: closed - Opened by stephenturner almost 9 years ago
- 2 comments
#34 - Error in plot.window(...) : need finite 'ylim' values
Issue -
State: closed - Opened by Adisha05 almost 9 years ago
- 11 comments
#33 - Label snps feature request
Issue -
State: closed - Opened by bbanbury almost 9 years ago
- 2 comments
Labels: enhancement, wontfix
#32 - About return value
Issue -
State: closed - Opened by zjf19870628 about 9 years ago
- 3 comments
Labels: enhancement, wontfix
#31 - add gene names to manhattan?
Issue -
State: closed - Opened by kippakers about 9 years ago
- 1 comment
#30 - how change Y axis
Issue -
State: closed - Opened by Amirak18 about 9 years ago
- 1 comment
#29 - qq accepts data.frame and supports highlighting
Pull Request -
State: closed - Opened by cth over 9 years ago
- 1 comment
#28 - adding background color
Issue -
State: closed - Opened by ckanag over 9 years ago
- 1 comment
#27 - fix bug for axis location with missing chromosomes.
Pull Request -
State: closed - Opened by Liubuntu over 9 years ago
- 1 comment
#26 - subsetting to chromosome for the plot isn't working right
Issue -
State: closed - Opened by ehscholl over 9 years ago
- 1 comment
#25 - Error in axis (1, at=ticks)
Issue -
State: closed - Opened by bdvelie over 9 years ago
- 7 comments
#24 - qq function: probability plot not quantile-quantile plot
Issue -
State: closed - Opened by sathishksrinivasan over 9 years ago
- 1 comment
#23 - Lines
Issue -
State: closed - Opened by bthada over 9 years ago
- 2 comments
#22 - chrlabs for non-human data and logp not working
Issue -
State: closed - Opened by renaschweizer over 9 years ago
- 5 comments
#21 - Single chomosome results, x-axis compressed
Issue -
State: closed - Opened by stephenturner almost 10 years ago
- 6 comments
#20 - Multiple manhattan plots in the same graph.
Issue -
State: closed - Opened by rslohs almost 10 years ago
- 1 comment
#19 - Return of SNP annotation to manhattan.R
Issue -
State: closed - Opened by sirselim about 10 years ago
- 1 comment
#18 - Change x-axis ticks to Mega bases(Mb) and add colour when plotting 1 Chr.
Pull Request -
State: closed - Opened by timknut about 10 years ago
- 1 comment
#17 - Could you please help to sort out some error when running the manhattan function? Many thanks!
Issue -
State: closed - Opened by owwa about 10 years ago
- 1 comment
#16 - Manhattan Plot function -- X-axis fit and Y-axis fit
Issue -
State: closed - Opened by tushardave26 about 10 years ago
- 7 comments
#15 - X-axis and Y- axis limit for Q-Q plot
Issue -
State: closed - Opened by tushardave26 about 10 years ago
- 13 comments
#14 - strange Manhattan plots
Issue -
State: closed - Opened by kkleinoros over 10 years ago
- 5 comments
#13 - highlight not working
Issue -
State: closed - Opened by isp2 over 10 years ago
- 3 comments
#12 - Re-implement confidence intervals in qq()
Issue -
State: closed - Opened by stephenturner over 10 years ago
- 4 comments
Labels: enhancement
#11 - default value to plot
Issue -
State: closed - Opened by jessehoff over 10 years ago
- 5 comments
#10 - ‘CHR column should be numeric’
Issue -
State: closed - Opened by LingIPK over 10 years ago
- 4 comments
#9 - plot q-values
Issue -
State: closed - Opened by stephenturner over 10 years ago
#8 - Error in manhattan(results) : P column should be numeric.
Issue -
State: closed - Opened by cjfiscus over 10 years ago
- 3 comments
#7 - added ... to plot() in qq function
Pull Request -
State: closed - Opened by timknut over 10 years ago
- 1 comment
#6 - Column of text for annotation
Issue -
State: closed - Opened by stephenturner almost 11 years ago
- 2 comments
#5 - Code on blog post: highlight=snps_to_highlight errors
Issue -
State: closed - Opened by stephenturner over 11 years ago
- 7 comments
Labels: bug
#4 - slightly modified option names and passing
Pull Request -
State: closed - Opened by dcapurso over 11 years ago
#3 - slightly modified option names and passing
Pull Request -
State: closed - Opened by dcapurso over 11 years ago
#1 - A typo in qqman.r
Issue -
State: closed - Opened by misshie over 11 years ago
- 1 comment