stemangiola/tidyseurat issues and pull requests

#86 - Use rlang instead of ellipsis for dot checking

Pull Request - State: closed - Opened by olivroy 3 months ago - 1 comment

#85 - Hotfix seurat5 one cell bug

Pull Request - State: closed - Opened by stemangiola 4 months ago

#84 - Slice can't be called on Seurat object directly

Issue - State: closed - Opened by RoganGrant 8 months ago - 4 comments

#83 - Add SingleR to Bioc

Pull Request - State: closed - Opened by olivroy 10 months ago - 1 comment

#82 - Add website to DESCRIPTION + update config.

Pull Request - State: closed - Opened by olivroy 10 months ago - 1 comment

#81 - tidyseurat::aggregate_cells doesn't pull all meta.data columns of Seurat object?

Issue - State: open - Opened by denvercal1234GitHub 10 months ago - 4 comments

#80 - `group_split`

Pull Request - State: closed - Opened by B0ydT 11 months ago - 3 comments

#79 - changed github action

Pull Request - State: closed - Opened by stemangiola 12 months ago

#78 - Error: 'ggplot' is not an exported object from 'namespace:tidyseurat'

Issue - State: closed - Opened by denvercal1234GitHub 12 months ago - 2 comments

#77 - Adapt to seurat5

Pull Request - State: closed - Opened by stemangiola 12 months ago

#76 - use DietSeurat instead of manual subsetting

Pull Request - State: closed - Opened by stemangiola about 1 year ago

#75 - aggregate_cells bug

Issue - State: closed - Opened by aodainic7 about 1 year ago

#74 - Prepare for upcoming Seurat v5 Release

Issue - State: open - Opened by Gesmira about 1 year ago - 1 comment

#73 - Update github actions

Pull Request - State: closed - Opened by noriakis about 1 year ago
Labels: enhancement

#72 - Update `slice_sample` in `dplyr_methods.R`

Pull Request - State: closed - Opened by noriakis about 1 year ago - 4 comments

#71 - Documentation revision

Pull Request - State: closed - Opened by noriakis about 1 year ago - 4 comments

#70 - Fix conflict with ttservice

Pull Request - State: closed - Opened by stemangiola about 1 year ago

#69 - Allow to select a slot (e.g. scaled, raw etc..) in join_features()

Pull Request - State: closed - Opened by noriakis about 1 year ago - 2 comments

#68 - Add slice_ functions

Pull Request - State: closed - Opened by wvictor14 about 1 year ago - 8 comments
Labels: enhancement

#67 - Increase unit test coverage

Pull Request - State: closed - Opened by william-hutchison about 1 year ago - 6 comments

#66 - Improve the documentation of tidytranscriptomics adapters, `tidySE`, `tidySCE`, `tidySPE`, `tidyseurat`

Issue - State: closed - Opened by stemangiola over 1 year ago - 18 comments
Labels: documentation, good first issue

#65 - Implement group_by and with_groups for tidyseurat

Issue - State: open - Opened by stemangiola over 1 year ago
Labels: enhancement

#64 - join_feature, allow to select a slot (e.g. scaled, raw etc..)

Issue - State: closed - Opened by stemangiola over 1 year ago - 12 comments
Labels: enhancement

#63 - drop exports to generics

Pull Request - State: closed - Opened by stemangiola over 1 year ago - 1 comment

#62 - Drop bind generics

Pull Request - State: closed - Opened by stemangiola over 1 year ago

#61 - Aggregate cells

Pull Request - State: closed - Opened by stemangiola over 1 year ago

#60 - Nest speedup

Pull Request - State: closed - Opened by stemangiola over 1 year ago

#59 - Error when attempting to merge Seurat Objects after filtering

Issue - State: open - Opened by william-hutchison over 1 year ago - 4 comments
Labels: bug

#58 - sample_frac function changes the cell order

Issue - State: open - Opened by aodainic7 over 1 year ago - 2 comments

#57 - use all_of

Pull Request - State: open - Opened by stemangiola over 1 year ago

#56 - drop the .drop argument

Pull Request - State: open - Opened by stemangiola over 1 year ago

#55 - add method

Pull Request - State: closed - Opened by stemangiola almost 2 years ago

#54 - add method

Pull Request - State: closed - Opened by stemangiola almost 2 years ago

#53 - Renaming genes

Issue - State: closed - Opened by alwhiteh almost 2 years ago - 1 comment

#52 - fix generics

Pull Request - State: closed - Opened by stemangiola over 2 years ago

#51 - documentation with real data, ie SRS/SRA number

Issue - State: closed - Opened by alperyilmaz over 2 years ago - 2 comments

#50 - fixed print

Pull Request - State: closed - Opened by stemangiola over 2 years ago

#49 - Change `pivot_longer()` argument defaults from `list()` to `NULL`

Pull Request - State: closed - Opened by DavisVaughan almost 3 years ago

#48 - Add build_args --no-manual

Pull Request - State: closed - Opened by mblue9 almost 3 years ago - 3 comments

#47 - add biocasia workshop

Pull Request - State: closed - Opened by stemangiola almost 3 years ago

#46 - Dev

Pull Request - State: closed - Opened by stemangiola almost 3 years ago

#45 - bring add_count to service package

Issue - State: open - Opened by stemangiola almost 3 years ago

#44 - Will you continue supporting future versions of Seurat?

Issue - State: closed - Opened by chansigit almost 3 years ago - 2 comments

#43 - Update README.md

Pull Request - State: closed - Opened by stemangiola almost 3 years ago

#42 - Change cell column name

Pull Request - State: closed - Opened by stemangiola almost 3 years ago

#41 - Dev

Pull Request - State: closed - Opened by stemangiola about 3 years ago

#40 - Avoid importing colonnade(), extra_cols() and squeeze()

Issue - State: closed - Opened by krlmlr about 3 years ago - 2 comments

#39 - Dev

Pull Request - State: closed - Opened by stemangiola about 3 years ago