Ecosyste.ms: Issues

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GitHub / stemangiola/tidybulk issues and pull requests

#213 - Force library size

Pull Request - State: closed - Opened by stemangiola about 3 years ago

#212 - Retain count_scaled in as_SummarizedExperiment()

Issue - State: closed - Opened by jianwu1 about 3 years ago - 3 comments

#208 - Using contrasts instead of .contrasts is silently ignored

Issue - State: closed - Opened by mblue9 about 3 years ago - 2 comments

#207 - Sparse counts

Pull Request - State: closed - Opened by stemangiola about 3 years ago

#184 - import from tximeta RangedSummarizedExperiment ?

Issue - State: closed - Opened by AMChalkie over 3 years ago - 23 comments

#182 - Use feature instead of transcript

Issue - State: closed - Opened by stemangiola over 3 years ago - 1 comment
Labels: enhancement

#181 - `tidybulk` Replace pivot_* with select_columns_*

Issue - State: open - Opened by stemangiola over 3 years ago - 3 comments
Labels: enhancement

#180 - Feedback from talk: get_bibliography

Issue - State: open - Opened by stemangiola over 3 years ago - 1 comment
Labels: enhancement

#169 - Share vignette readme

Pull Request - State: closed - Opened by mblue9 over 3 years ago - 2 comments

#142 - create deseq2 example

Pull Request - State: closed - Opened by stemangiola almost 4 years ago

#141 - Improve examples test

Pull Request - State: closed - Opened by stemangiola almost 4 years ago

#140 - tolower

Pull Request - State: closed - Opened by stemangiola almost 4 years ago

#139 - Improve diff tissue composition

Pull Request - State: closed - Opened by stemangiola almost 4 years ago

#136 - pass ... ellipse argument to test_differential_abundance

Issue - State: closed - Opened by stemangiola almost 4 years ago - 4 comments
Labels: enhancement

#132 - HOT-FIX Fix deconvolution biblio

Pull Request - State: closed - Opened by stemangiola almost 4 years ago

#130 - add framework

Pull Request - State: closed - Opened by stemangiola almost 4 years ago - 3 comments

#105 - Do the README/Vignette trick for tidybulk

Issue - State: closed - Opened by stemangiola about 4 years ago - 5 comments
Labels: enhancement

#47 - test_gene_overrepresentation: visualising results

Issue - State: open - Opened by mblue9 over 4 years ago - 7 comments
Labels: enhancement

#34 - use functions as arguments instead of character strings

Issue - State: closed - Opened by stemangiola over 4 years ago
Labels: enhancement