Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / statgenlmu/jaatha issues and pull requests

#143 - [CI] Disable linting

Pull Request - State: closed - Opened by paulstaab almost 5 years ago - 1 comment
Labels: ready-to-merge

#142 - Fix checks

Pull Request - State: closed - Opened by paulstaab about 5 years ago - 1 comment

#141 - coarsen_jsfs should be exported

Issue - State: closed - Opened by paulstaab over 6 years ago

#140 - change Repostatus to inactive

Pull Request - State: closed - Opened by paulstaab over 7 years ago - 1 comment

#139 - Incorporates compatibility with new features added to Coala's mcmf

Pull Request - State: closed - Opened by jorgeamaya about 8 years ago

#138 - Problem with seeds in consecutive runs of Jaatha

Issue - State: closed - Opened by paulstaab about 8 years ago - 1 comment
Labels: bug

#137 - Prepare release of v3.2.0

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 2 comments

#136 - Use seq_len instead of 1:x

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: bug, enhancement

#135 - Fix one parameter models

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: bug

#134 - Export `final_sim` and `zoom_in_steps` options

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: enhancement

#133 - Fix error recovery

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: bug

#132 - Skip unittests if testthat is not available

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: internal

#131 - Improve error handling for failing simulations

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: enhancement

#130 - add support for using a folded JSFS

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement

#129 - test different r version on travis

Pull Request - State: closed - Opened by paulstaab over 8 years ago

#128 - Add `cores_per_run` option to `boot_jaatha`

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement

#127 - Remove call from long-simulation warning

Pull Request - State: closed - Opened by paulstaab over 8 years ago

#126 - try container based builds on travis

Pull Request - State: closed - Opened by paulstaab over 8 years ago

#125 - Fix #124

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: bug

#123 - add mailing list to readme

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement, documentation

#122 - Fix #121

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: bug

#121 - Estimated likelihood is 1!

Issue - State: closed - Opened by paulstaab over 8 years ago
Labels: bug

#120 - Add more assertions and comments

Pull Request - State: closed - Opened by paulstaab over 8 years ago - 1 comment
Labels: enhancement

#119 - Disable email notifications

Pull Request - State: closed - Opened by paulstaab over 8 years ago

#118 - Fix suppression of output with `verbose` argument in `jaatha` function

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: bug

#117 - Prepare the release of version 3.1.0

Pull Request - State: closed - Opened by paulstaab over 8 years ago

#116 - Fix type error

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: bug, internal

#115 - Respected 'block_width' in zoom-in initialization

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement, internal

#114 - Fix lints

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement, internal

#113 - Dump frames on simulation errors

Pull Request - State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement

#112 - Jaatha throws "Error: attempt to select more than one element"

Issue - State: closed - Opened by paulstaab almost 9 years ago - 1 comment
Labels: bug

#111 - increase robustness for 0 glm coefficients

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#110 - increase robustness to not-converging glms

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#109 - Export s3methods as functions

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#108 - Capture jaatha arguments automatically

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#107 - Optimize the scheduling of simulations

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#106 - Add print functions for results and document it

Issue - State: closed - Opened by paulstaab almost 9 years ago - 1 comment
Labels: enhancement

#105 - Save the call in the results instead of all arguments individually

Issue - State: closed - Opened by paulstaab almost 9 years ago - 1 comment
Labels: enhancement, internal

#104 - Add random init_method

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#103 - Add a limit to simulation cache

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#102 - Release v3.0.0

Pull Request - State: closed - Opened by paulstaab almost 9 years ago

#101 - Prepare version 3.0.0

Pull Request - State: closed - Opened by paulstaab almost 9 years ago

#100 - Add support function for bootstrapping

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#99 - Remove popgenome support

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#98 - Add infrastructure for vignettes

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: documentation

#97 - Update citation file format

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: documentation

#96 - Improve the import of popgenome data

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#95 - Add support for using high dimension frequency spectra

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#94 - Add support for coala 0.2.1

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#93 - Remove support for using iHS statistic

Pull Request - State: closed - Opened by paulstaab almost 9 years ago

#92 - add setter for data options

Pull Request - State: closed - Opened by paulstaab almost 9 years ago

#91 - Add data import from a list of segregating sites

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement

#90 - Update documentation

Pull Request - State: closed - Opened by paulstaab almost 9 years ago
Labels: documentation

#89 - Fix #76

Pull Request - State: closed - Opened by paulstaab about 9 years ago
Labels: bug

#88 - Ignore outer block area

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#87 - adapt README for use as general method

Pull Request - State: closed - Opened by paulstaab about 9 years ago
Labels: documentation

#86 - Fix imports from base packages

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#85 - Add appveyor config

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#84 - Increase test coverage

Pull Request - State: closed - Opened by paulstaab about 9 years ago
Labels: enhancement

#83 - switch to r-builder on travis

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#82 - Improve docs

Pull Request - State: closed - Opened by paulstaab about 9 years ago
Labels: documentation

#81 - Improve log messages

Pull Request - State: closed - Opened by paulstaab about 9 years ago
Labels: enhancement

#80 - export popgenome data import

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#79 - Deactivate outgroup check

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#78 - add option the set breaks in coala interface

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#77 - Add an interface for PopGenome data

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#76 - Error: $ operator is invalid for atomic vectors

Issue - State: closed - Opened by paulstaab about 9 years ago - 2 comments
Labels: bug

#75 - Fix missing values for cube statistics

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#74 - Add more tests

Pull Request - State: closed - Opened by paulstaab about 9 years ago
Labels: enhancement

#73 - Add tests for large log-factorials

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#72 - Infinite log-likelihood values

Issue - State: closed - Opened by paulstaab about 9 years ago - 1 comment
Labels: bug

#71 - avoid fail if all sim are 0 for one sumstat

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#70 - Rework interface

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#69 - fix support for coala 0.1.0

Pull Request - State: closed - Opened by paulstaab about 9 years ago

#68 - fix compatibility with newer coala version

Pull Request - State: closed - Opened by paulstaab over 9 years ago

#67 - Add option to create trios from data

Pull Request - State: closed - Opened by paulstaab over 9 years ago

#66 - Jaatha fails for non-positive parameter ranges

Issue - State: closed - Opened by paulstaab over 9 years ago - 1 comment
Labels: bug

#65 - Add support for using the SFS

Pull Request - State: closed - Opened by paulstaab over 9 years ago
Labels: enhancement

#64 - only use iHS for the statistic

Pull Request - State: closed - Opened by paulstaab over 9 years ago

#63 - make PopGenome optional

Pull Request - State: closed - Opened by paulstaab over 9 years ago

#62 - port blocks to R6

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 4 comments
Labels: enhancement

#61 - delegate jsfs calc to coalsimr

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#60 - use r language in travis

Pull Request - State: closed - Opened by paulstaab over 9 years ago

#59 - add support for iHH and omega' statistics

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 2 comments

#58 - fix fpc summary statistic

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#57 - Remove sumstats calculation

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#56 - fix compatibility with newer version of coalsimr

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#55 - Fix compatibility to coalsimr 0.0.9007

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 2 comments

#54 - Import calc jsfs

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#53 - Fix memory corruption

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#52 - add a test simulation at initialization

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 1 comment

#51 - Update format of CITATION file

Issue - State: closed - Opened by paulstaab over 9 years ago
Labels: enhancement

#50 - Separate DM into new package (#27)

Pull Request - State: closed - Opened by paulstaab over 9 years ago - 5 comments

#31 - Make import of real data easier

Issue - State: closed - Opened by paulstaab almost 10 years ago - 2 comments

#30 - Improve Jaatha's documentation

Issue - State: closed - Opened by paulstaab almost 10 years ago

#29 - Include vignettes in the package

Issue - State: closed - Opened by paulstaab almost 10 years ago

#28 - Make the use as general method more prominent

Issue - State: closed - Opened by paulstaab almost 10 years ago

#27 - Move the demographic model into a separate package

Issue - State: closed - Opened by paulstaab almost 10 years ago

#7 - Error in glm.fit: NA/NaN/Inf in 'x'

Issue - State: closed - Opened by paulstaab about 10 years ago - 12 comments
Labels: bug