Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / statgenlmu/jaatha issues and pull requests
#143 - [CI] Disable linting
Pull Request -
State: closed - Opened by paulstaab almost 5 years ago
- 1 comment
Labels: ready-to-merge
#142 - Fix checks
Pull Request -
State: closed - Opened by paulstaab about 5 years ago
- 1 comment
#141 - coarsen_jsfs should be exported
Issue -
State: closed - Opened by paulstaab over 6 years ago
#140 - change Repostatus to inactive
Pull Request -
State: closed - Opened by paulstaab over 7 years ago
- 1 comment
#139 - Incorporates compatibility with new features added to Coala's mcmf
Pull Request -
State: closed - Opened by jorgeamaya about 8 years ago
#138 - Problem with seeds in consecutive runs of Jaatha
Issue -
State: closed - Opened by paulstaab about 8 years ago
- 1 comment
Labels: bug
#137 - Prepare release of v3.2.0
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 2 comments
#136 - Use seq_len instead of 1:x
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: bug, enhancement
#135 - Fix one parameter models
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: bug
#134 - Export `final_sim` and `zoom_in_steps` options
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: enhancement
#133 - Fix error recovery
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: bug
#132 - Skip unittests if testthat is not available
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: internal
#131 - Improve error handling for failing simulations
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: enhancement
#130 - add support for using a folded JSFS
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement
#129 - test different r version on travis
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
#128 - Add `cores_per_run` option to `boot_jaatha`
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement
#127 - Remove call from long-simulation warning
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
#126 - try container based builds on travis
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
#125 - Fix #124
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: bug
#124 - Overly eager check for insensitive summary statistics can cause false results with v3.1.0
Issue -
State: closed - Opened by paulstaab over 8 years ago
Labels: bug
#123 - add mailing list to readme
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement, documentation
#122 - Fix #121
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: bug
#121 - Estimated likelihood is 1!
Issue -
State: closed - Opened by paulstaab over 8 years ago
Labels: bug
#120 - Add more assertions and comments
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
- 1 comment
Labels: enhancement
#119 - Disable email notifications
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
#118 - Fix suppression of output with `verbose` argument in `jaatha` function
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: bug
#117 - Prepare the release of version 3.1.0
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
#116 - Fix type error
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: bug, internal
#115 - Respected 'block_width' in zoom-in initialization
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement, internal
#114 - Fix lints
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement, internal
#113 - Dump frames on simulation errors
Pull Request -
State: closed - Opened by paulstaab over 8 years ago
Labels: enhancement
#112 - Jaatha throws "Error: attempt to select more than one element"
Issue -
State: closed - Opened by paulstaab almost 9 years ago
- 1 comment
Labels: bug
#111 - increase robustness for 0 glm coefficients
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#110 - increase robustness to not-converging glms
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#109 - Export s3methods as functions
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#108 - Capture jaatha arguments automatically
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#107 - Optimize the scheduling of simulations
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#106 - Add print functions for results and document it
Issue -
State: closed - Opened by paulstaab almost 9 years ago
- 1 comment
Labels: enhancement
#105 - Save the call in the results instead of all arguments individually
Issue -
State: closed - Opened by paulstaab almost 9 years ago
- 1 comment
Labels: enhancement, internal
#104 - Add random init_method
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#103 - Add a limit to simulation cache
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#102 - Release v3.0.0
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
#101 - Prepare version 3.0.0
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
#100 - Add support function for bootstrapping
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#99 - Remove popgenome support
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#98 - Add infrastructure for vignettes
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: documentation
#97 - Update citation file format
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: documentation
#96 - Improve the import of popgenome data
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#95 - Add support for using high dimension frequency spectra
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#94 - Add support for coala 0.2.1
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#93 - Remove support for using iHS statistic
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
#92 - add setter for data options
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
#91 - Add data import from a list of segregating sites
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: enhancement
#90 - Update documentation
Pull Request -
State: closed - Opened by paulstaab almost 9 years ago
Labels: documentation
#89 - Fix #76
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
Labels: bug
#88 - Ignore outer block area
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#87 - adapt README for use as general method
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
Labels: documentation
#86 - Fix imports from base packages
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#85 - Add appveyor config
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#84 - Increase test coverage
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
Labels: enhancement
#83 - switch to r-builder on travis
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#82 - Improve docs
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
Labels: documentation
#81 - Improve log messages
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
Labels: enhancement
#80 - export popgenome data import
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#79 - Deactivate outgroup check
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#78 - add option the set breaks in coala interface
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#77 - Add an interface for PopGenome data
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#76 - Error: $ operator is invalid for atomic vectors
Issue -
State: closed - Opened by paulstaab about 9 years ago
- 2 comments
Labels: bug
#75 - Fix missing values for cube statistics
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#74 - Add more tests
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
Labels: enhancement
#73 - Add tests for large log-factorials
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#72 - Infinite log-likelihood values
Issue -
State: closed - Opened by paulstaab about 9 years ago
- 1 comment
Labels: bug
#71 - avoid fail if all sim are 0 for one sumstat
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#70 - Rework interface
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#69 - fix support for coala 0.1.0
Pull Request -
State: closed - Opened by paulstaab about 9 years ago
#68 - fix compatibility with newer coala version
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
#67 - Add option to create trios from data
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
#66 - Jaatha fails for non-positive parameter ranges
Issue -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
Labels: bug
#65 - Add support for using the SFS
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
Labels: enhancement
#64 - only use iHS for the statistic
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
#63 - make PopGenome optional
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
#62 - port blocks to R6
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 4 comments
Labels: enhancement
#61 - delegate jsfs calc to coalsimr
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#60 - use r language in travis
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
#59 - add support for iHH and omega' statistics
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 2 comments
#58 - fix fpc summary statistic
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#57 - Remove sumstats calculation
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#56 - fix compatibility with newer version of coalsimr
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#55 - Fix compatibility to coalsimr 0.0.9007
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 2 comments
#54 - Import calc jsfs
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#53 - Fix memory corruption
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#52 - add a test simulation at initialization
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 1 comment
#51 - Update format of CITATION file
Issue -
State: closed - Opened by paulstaab over 9 years ago
Labels: enhancement
#50 - Separate DM into new package (#27)
Pull Request -
State: closed - Opened by paulstaab over 9 years ago
- 5 comments
#31 - Make import of real data easier
Issue -
State: closed - Opened by paulstaab almost 10 years ago
- 2 comments
#30 - Improve Jaatha's documentation
Issue -
State: closed - Opened by paulstaab almost 10 years ago
#29 - Include vignettes in the package
Issue -
State: closed - Opened by paulstaab almost 10 years ago
#28 - Make the use as general method more prominent
Issue -
State: closed - Opened by paulstaab almost 10 years ago
#27 - Move the demographic model into a separate package
Issue -
State: closed - Opened by paulstaab almost 10 years ago
#7 - Error in glm.fit: NA/NaN/Inf in 'x'
Issue -
State: closed - Opened by paulstaab about 10 years ago
- 12 comments
Labels: bug