Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / statgen/pheweb issues and pull requests

#234 - 482 gnomad4 population afs not shown on hover over

Pull Request - State: closed - Opened by anastasia-shch 6 months ago

#233 - 519 switch manhattan compression

Pull Request - State: closed - Opened by majorseitan 7 months ago - 1 comment

#232 - `pheweb augment-phenos` takes hours for just one single new GWAS

Issue - State: open - Opened by jielab 7 months ago - 2 comments

#231 - Fix import

Pull Request - State: closed - Opened by majorseitan 8 months ago

#230 - Some Manhattan Plots don't show up

Issue - State: open - Opened by jielab 8 months ago - 10 comments

#228 - after i renamed the input GWAS files

Issue - State: open - Opened by jielab 8 months ago - 5 comments

#227 - interpretation

Issue - State: closed - Opened by Afreen89 8 months ago - 1 comment

#226 - Starting `pheweb add-rsids`, Completed in 57 minutes

Issue - State: closed - Opened by jielab 9 months ago - 2 comments

#225 - how to display the phenotypes in sorted order?

Issue - State: open - Opened by jielab 9 months ago - 9 comments

#223 - the content of pheweb

Issue - State: closed - Opened by dqq0404 10 months ago - 1 comment

#222 - METSIM Pheweb Instance Not Working

Issue - State: closed - Opened by relgamal 10 months ago - 1 comment

#221 - Installation Problem

Issue - State: closed - Opened by xuxiny17 11 months ago - 7 comments

#220 - pheweb-rg-pipeline does NOT work

Issue - State: closed - Opened by jielab 12 months ago - 1 comment

#219 - Feature: added current r12 configs

Pull Request - State: closed - Opened by anastasia-shch 12 months ago - 1 comment

#218 - PheWeb can display phenotype correlations generated by another tool.

Issue - State: closed - Opened by jielab 12 months ago - 4 comments

#217 - outdated instruction "pheweb phenolist glob-files"

Issue - State: open - Opened by jielab 12 months ago - 2 comments

#216 - pheweb to display multiple GWAS?

Issue - State: closed - Opened by jielab 12 months ago - 1 comment

#215 - Universal Analytics is now depricated.

Pull Request - State: closed - Opened by VChapdelaineT about 1 year ago - 1 comment

#214 - 425 add health checks

Pull Request - State: closed - Opened by majorseitan over 1 year ago

#213 - "An exception occurred" when I run the command: pheweb serve --open

Issue - State: open - Opened by ikio3 over 1 year ago - 3 comments

#212 - 404 not found error of phewas plot page (Pheweb with structural variants)

Issue - State: closed - Opened by sylee20 over 1 year ago - 4 comments

#211 - ModuleNotFoundError: No module named 'pheweb.command_line'

Issue - State: closed - Opened by sylee20 over 1 year ago - 3 comments

#210 - Refine gene phenotype detail

Pull Request - State: closed - Opened by majorseitan over 1 year ago - 1 comment

#209 - stroke

Issue - State: closed - Opened by shasha520520 over 1 year ago

#208 - Core features of pheweb: ref/alt, add_rsid, hg17/38

Issue - State: closed - Opened by jielab over 1 year ago - 3 comments

#207 - add support for 'pval_is_neglog10' config option

Pull Request - State: closed - Opened by MatthewMaher almost 2 years ago - 1 comment

#206 - Add pQTL and disease colocalization table to the gene page

Pull Request - State: closed - Opened by anastasia-shch almost 2 years ago - 1 comment

#205 - URI as assoc_files in pheno_list.json

Issue - State: closed - Opened by vineetver about 2 years ago - 1 comment

#204 - Easier Way to Use Custom LD?

Issue - State: open - Opened by ttbek about 2 years ago - 6 comments

#203 - 279 variant page fails on chromosome x

Pull Request - State: closed - Opened by majorseitan about 2 years ago

#202 - 272 gene page table layout

Pull Request - State: closed - Opened by majorseitan over 2 years ago

#201 - Variants page is not displayed

Issue - State: closed - Opened by Hiroaki-S-Ri over 2 years ago - 3 comments

#200 - 258 change default on lava plot

Pull Request - State: closed - Opened by majorseitan over 2 years ago

#199 - url_for in random does not allow https

Issue - State: closed - Opened by CaliWee over 2 years ago - 9 comments

#198 - Save manhattan plot as png/svg

Issue - State: closed - Opened by 11Dmitriy11 over 2 years ago - 1 comment

#197 - -log10 pvalue input support

Issue - State: closed - Opened by VChapdelaineT over 2 years ago - 1 comment

#196 - Use gzip -5 to make matrix

Pull Request - State: closed - Opened by pjvandehaar over 2 years ago

#195 - 213 remove lock on region

Pull Request - State: closed - Opened by majorseitan almost 3 years ago

#194 - Genetic correlations are not shown

Issue - State: closed - Opened by 11Dmitriy11 almost 3 years ago - 2 comments

#193 - adding vep annotation manually

Issue - State: closed - Opened by 11Dmitriy11 almost 3 years ago

#192 - 188 autocomplete missing variant

Pull Request - State: closed - Opened by majorseitan almost 3 years ago

#191 - Enhancing the search bar

Issue - State: closed - Opened by Sergey-Knyazev almost 3 years ago - 1 comment

#190 - added possibility to hide download button for top hits and phenotypes

Pull Request - State: closed - Opened by Sergey-Knyazev about 3 years ago - 3 comments

#189 - Hiding download buttons

Issue - State: closed - Opened by Sergey-Knyazev about 3 years ago - 1 comment

#188 - manhattan plot not show when NaN in variant_bins(json file)

Pull Request - State: closed - Opened by benjaminfang about 3 years ago - 4 comments

#187 - Installation via miniconda & native python breaks at build step for cffi

Issue - State: closed - Opened by abiddanda54gene about 3 years ago - 7 comments

#186 - 175 search redirect broken

Pull Request - State: closed - Opened by majorseitan about 3 years ago

#185 - Update PheWeb for changes in LZjs 0.14.0

Pull Request - State: open - Opened by abought about 3 years ago - 2 comments

#184 - 157 improve not found message

Pull Request - State: closed - Opened by majorseitan about 3 years ago

#183 - Phecodes

Issue - State: open - Opened by vkp3 over 3 years ago - 1 comment

#182 - error when there is NA for allele frequency

Issue - State: closed - Opened by jielab over 3 years ago - 2 comments

#181 - gene-based pheweb site

Issue - State: closed - Opened by Shicheng-Guo over 3 years ago - 1 comment

#180 - Support input in gwas-vcf format

Issue - State: closed - Opened by jielab over 3 years ago - 4 comments
Labels: enhancement

#179 - failed to run 'pip3 install pheweb'

Issue - State: closed - Opened by christine1729 over 3 years ago - 4 comments

#178 - pheweb sites for `slurm cluster`

Issue - State: closed - Opened by Shicheng-Guo over 3 years ago - 3 comments

#177 - How to estimate time for `sites && pheweb make-gene-aliases-sqlite3` step?

Issue - State: closed - Opened by Shicheng-Guo over 3 years ago - 5 comments

#175 - Update README.md

Pull Request - State: closed - Opened by Shicheng-Guo over 3 years ago - 1 comment

#174 - best practice for adding new summary statistics files

Issue - State: closed - Opened by Shicheng-Guo over 3 years ago - 2 comments

#173 - one line fix for add_rsids.py

Issue - State: closed - Opened by jielab over 3 years ago - 1 comment

#172 - other allowed column names

Issue - State: closed - Opened by Shicheng-Guo over 3 years ago - 1 comment

#171 - host Pheweb on Dreamhost.com

Issue - State: closed - Opened by jielab over 3 years ago - 1 comment

#170 - 6 issues/requests for PheWEB

Issue - State: closed - Opened by jielab over 3 years ago - 5 comments

#169 - "pip3 install pheweb" failed

Issue - State: closed - Opened by jielab over 3 years ago - 7 comments

#168 - config.py template, and host on dreamhost.com

Issue - State: closed - Opened by jielab over 3 years ago - 7 comments

#167 - Support Regenie output format from pheweb

Issue - State: closed - Opened by Shicheng-Guo over 3 years ago - 3 comments

#166 - update autocomplete to be more comprehensive

Pull Request - State: closed - Opened by hanayik over 3 years ago - 3 comments

#165 - pheweb parsing errors

Issue - State: closed - Opened by jzluo over 3 years ago - 1 comment

#164 - Fixes to cluster feature

Pull Request - State: closed - Opened by frankp-0 over 3 years ago - 2 comments

#162 - Error 404s and missing LDs in WSGI based apache2 webserver

Issue - State: closed - Opened by eikematthias almost 4 years ago - 7 comments

#161 - How to host a pheweb accessible on the internet

Issue - State: closed - Opened by Mohammad-Vahed almost 4 years ago - 9 comments

#160 - Upgrade to LZ JS 0.13

Pull Request - State: closed - Opened by abought almost 4 years ago - 1 comment

#159 - matrix not being updated with phenotypes

Issue - State: closed - Opened by jw-insitro almost 4 years ago - 3 comments

#158 - Check that reference allele is really the reference allele on the reference genome

Issue - State: closed - Opened by ttbek almost 4 years ago - 3 comments

#157 - Regex fix

Pull Request - State: closed - Opened by piotor87 about 4 years ago - 3 comments

#156 - Gunicorn Segfault

Issue - State: closed - Opened by ttbek about 4 years ago - 2 comments

#155 - gzip error on dbSNP download during 'pheweb add-rsids'

Issue - State: closed - Opened by ttbek about 4 years ago - 3 comments

#154 - Remove a phenotype

Issue - State: closed - Opened by jgrundstad about 4 years ago - 1 comment

#153 - Necessary Data for the Normal Function of Pheweb

Issue - State: closed - Opened by Shicheng-Guo about 4 years ago - 1 comment

#152 - A pheweb instance needs restarting

Issue - State: closed - Opened by abought over 4 years ago - 6 comments
Labels: bug

#149 - `pheweb process --no-parse` is killed during the processing

Issue - State: closed - Opened by Shicheng-Guo over 4 years ago - 3 comments

#147 - Colocalization region react

Pull Request - State: closed - Opened by majorseitan over 4 years ago

#143 - rsid change or missing

Issue - State: closed - Opened by stat-yyang over 4 years ago - 3 comments

#141 - `marisa-trie` causes a segfault in `pheweb make-tries`

Issue - State: closed - Opened by pjvandehaar over 4 years ago - 1 comment

#127 - Fold LZ y-axis

Issue - State: closed - Opened by pjvandehaar over 5 years ago - 2 comments

#126 - X fix jk

Pull Request - State: closed - Opened by juhis almost 6 years ago

#125 - use SGE for multiprocessing

Issue - State: closed - Opened by dl016d almost 6 years ago - 4 comments

#124 - Unit tests failing on Travis, slow to run locally

Issue - State: closed - Opened by abought almost 6 years ago - 1 comment

#121 - download button on "All Phenotypes" page

Issue - State: closed - Opened by dtaliun about 6 years ago - 1 comment

#119 - phenotype group in "Top Hits" table

Issue - State: closed - Opened by dtaliun about 6 years ago - 1 comment
Labels: priority high

#116 - Allow assoc_min_mac and assoc_min_r2

Issue - State: closed - Opened by pjvandehaar over 6 years ago - 1 comment

#115 - Feature request: multithreaded `pheweb matrix`

Issue - State: open - Opened by jgrundstad over 6 years ago - 9 comments

#113 - Support build 38

Issue - State: closed - Opened by pjvandehaar over 6 years ago - 4 comments

#109 - Replace twitter-typeahead with corejavascript-typeahead

Issue - State: closed - Opened by pjvandehaar almost 7 years ago

#103 - fold PheWAS y-axis at pval=20

Issue - State: open - Opened by pjvandehaar about 7 years ago