Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / statbiophys/soNNia issues and pull requests
#24 - Use polars as a backend for data manipulation
Issue -
State: open - Opened by zacmon 3 months ago
#23 - Add a check that no features are missing
Issue -
State: open - Opened by zacmon 3 months ago
#22 - human B heavy V and J anchors are wrong
Issue -
State: open - Opened by zacmon 3 months ago
#21 - Edited add_generated_seqs logging statement to work with paired models. Added paired model inference to tests
Pull Request -
State: closed - Opened by zacmon 4 months ago
#20 - Created SoniaDataset for mini-batching.
Pull Request -
State: closed - Opened by zacmon 4 months ago
#19 - Fixed filtering and loading gen_seqs for ppost_model
Pull Request -
State: closed - Opened by zacmon 4 months ago
#18 - Mitigate RAM issues with dense one-hot encoding, fixed plotting functions
Pull Request -
State: closed - Opened by zacmon 4 months ago
#17 - Revert "Revert "Migrated to Keras3, changed encoding backend to scipy.sparse.csr_array""
Pull Request -
State: closed - Opened by giulioisac 4 months ago
#16 - Revert "Migrated to Keras3, changed encoding backend to scipy.sparse.csr_array"
Pull Request -
State: closed - Opened by giulioisac 4 months ago
#15 - Migrated to Keras3, changed encoding backend to scipy.sparse.csr_array
Pull Request -
State: closed - Opened by zacmon 4 months ago
- 2 comments
#14 - Wrong model initializations are caught with helpful error messages
Pull Request -
State: closed - Opened by zacmon 5 months ago
- 1 comment
#13 - Missing TRA V/J combinations in generated repertoires
Issue -
State: closed - Opened by ejackson054 6 months ago
- 4 comments
#12 - More error checking
Pull Request -
State: closed - Opened by zacmon 7 months ago
- 3 comments
#11 - compare repertoires
Pull Request -
State: closed - Opened by giulioisac 8 months ago
#10 - toml
Pull Request -
State: closed - Opened by giulioisac 8 months ago
#9 - Merge from single class
Pull Request -
State: closed - Opened by giulioisac 8 months ago
#8 - Parallelized sequence generation and linear energy computation
Pull Request -
State: closed - Opened by zacmon 9 months ago
- 1 comment
#7 - Fixed loading of paired models. Processor class is now a singular utils function. Across chain features added for paired class.
Pull Request -
State: closed - Opened by zacmon 10 months ago
#6 - Feature request: consolidating chain_type and custom_pgen_model into one argument: pgen_model
Issue -
State: closed - Opened by zacmon 10 months ago
- 1 comment
#5 - Optimized processing and functions in paired model. Continued tidying and modularizing code.
Pull Request -
State: closed - Opened by zacmon 10 months ago
- 4 comments
#3 - Fixed joint feature loading. Sped up feature extraction. Removed redundant for loops. Adding typing.
Pull Request -
State: closed - Opened by zacmon 11 months ago
- 2 comments
#2 - how to compare repertoires
Issue -
State: closed - Opened by vanessajmh over 2 years ago
- 1 comment
#1 - nans obtained when training the model with very different pre and post dataset sizes
Issue -
State: closed - Opened by adigioacchino almost 3 years ago