statOmics/satuRn issues and pull requests

#32 - [BUG] Error in locfdr, ML estimation fails

Issue - State: closed - Opened by berilerdogdu about 1 year ago - 6 comments
Labels: bug

#31 - Recommendation for large.n in filterByExpr

Issue - State: closed - Opened by TdzBAS over 1 year ago - 1 comment

#30 - Preprocessing killed

Issue - State: closed - Opened by TdzBAS over 1 year ago - 4 comments

#29 - Error fitDTU : Error in if (m == 0) { : missing value where TRUE/FALSE needed

Issue - State: closed - Opened by TdzBAS almost 2 years ago - 17 comments

#28 - Vignettes

Pull Request - State: closed - Opened by jgilis almost 2 years ago

#27 - Vignettes

Pull Request - State: closed - Opened by jgilis almost 2 years ago

#26 - Vignettes

Pull Request - State: closed - Opened by jgilis almost 2 years ago

#25 - Problems in fitDTU function and usage in SingleCellExperiment class

Issue - State: closed - Opened by mcortes-lopez almost 2 years ago - 9 comments
Labels: bug

#24 - Lowering the memory consumption of `fitDTU.R`

Pull Request - State: closed - Opened by jgilis over 2 years ago

#23 - plotDTU coefficients

Issue - State: closed - Opened by jchang97 over 2 years ago - 4 comments

#22 - Is it compatible with 10X? Could it work with Seurat object? Should I use alevin/alevin-fry?

Issue - State: closed - Opened by Romeo1-1 over 2 years ago - 2 comments

#21 - Fix testDTU issue

Pull Request - State: closed - Opened by jgilis over 2 years ago

#20 - [ENHANCEMENT] Do not run empirical correction when too few features

Issue - State: closed - Opened by jgilis over 2 years ago - 1 comment
Labels: enhancement

#19 - FDR control and use of raw counts

Issue - State: closed - Opened by ChiaraCaprioli over 2 years ago - 11 comments

#18 - Empty levels

Pull Request - State: closed - Opened by jgilis about 3 years ago - 1 comment

#17 - [BUG] Usages of genes with only one isoform

Issue - State: closed - Opened by jgilis about 3 years ago - 1 comment
Labels: bug

#16 - Issue related to fitDTU .calcVcovUnscaled()

Issue - State: closed - Opened by XueyiDong over 3 years ago - 4 comments
Labels: bug

#15 - `fitDTU` breaks in presence of unexpressed transcripts

Issue - State: closed - Opened by jgilis over 3 years ago - 1 comment
Labels: bug

#14 - Use of covariates

Issue - State: closed - Opened by antgomo over 3 years ago - 1 comment

#13 - Review

Pull Request - State: closed - Opened by jgilis over 3 years ago

#12 - Review

Pull Request - State: closed - Opened by jgilis over 3 years ago

#11 - Enhancement: report diagnostic elements of the empirical nul correction

Issue - State: closed - Opened by jgilis almost 4 years ago - 1 comment
Labels: documentation, enhancement

#10 - [BUG] Using contrasts with covariates

Issue - State: closed - Opened by jackhump almost 4 years ago - 5 comments

#9 - [ENHANCEMENT] Update vignette on README and links to more recent version

Issue - State: closed - Opened by jackhump almost 4 years ago - 3 comments
Labels: documentation, enhancement

#8 - R4.1

Pull Request - State: closed - Opened by jgilis almost 4 years ago