Ecosyste.ms: Issues

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GitHub / statOmics/msqrob2 issues and pull requests

#64 - Issue https://github.com/statOmics/msqrob2/issues/63

Pull Request - State: closed - Opened by leopoldguyot 6 months ago - 2 comments

#62 - Issue 59

Pull Request - State: open - Opened by StijnVandenbulcke 10 months ago - 2 comments

#61 - Allow further arguments in msqrobAggregate

Pull Request - State: open - Opened by StijnVandenbulcke 10 months ago - 1 comment

#60 - Implemented msqrobAggregate() method for SummarizedExperiment objects

Pull Request - State: closed - Opened by cvanderaa 10 months ago - 2 comments

#58 - Allow further arguments in `msqrobAggregate()`

Issue - State: open - Opened by cvanderaa 10 months ago

#57 - Updating News and Description files

Pull Request - State: closed - Opened by StijnVandenbulcke 10 months ago

#56 - Fixed Issues

Pull Request - State: closed - Opened by StijnVandenbulcke 10 months ago

#55 - Newest bioconductor release

Pull Request - State: closed - Opened by StijnVandenbulcke 10 months ago

#54 - Error in aggregateFeatures

Issue - State: open - Opened by yafeng about 1 year ago - 1 comment

#53 - msqrob2 report

Issue - State: open - Opened by DrSAUD over 1 year ago

#52 - any chance for better documentation

Issue - State: open - Opened by Apirog9 over 1 year ago

#51 - Bug fixes

Pull Request - State: closed - Opened by StijnVandenbulcke almost 2 years ago - 2 comments

#50 - Sync with release version of bioconductor.

Pull Request - State: closed - Opened by StijnVandenbulcke about 2 years ago

#49 - We have a problem using the mzTab file input type

Issue - State: open - Opened by Douerww about 2 years ago

#48 - formula for all pairwise comparisons

Issue - State: open - Opened by Aintzane99 about 2 years ago - 1 comment

#47 - Compatibility with DIA-NN?

Issue - State: open - Opened by Mengbo-Li over 2 years ago - 5 comments

#46 - MSqRobHurdle warnings

Issue - State: open - Opened by JobbeG over 2 years ago - 2 comments

#45 - Error : ndim is greater than number of rows of data

Issue - State: open - Opened by EmilieCarneiro over 2 years ago - 1 comment

#44 - Added functionality

Pull Request - State: closed - Opened by StijnVandenbulcke over 2 years ago

#42 - Temporary fix to replace the filterFeatures error

Pull Request - State: closed - Opened by StijnVandenbulcke over 2 years ago - 6 comments

#41 - Update GitHub Actions

Pull Request - State: closed - Opened by milanmlft over 2 years ago - 1 comment

#40 - Vignette building fails

Issue - State: closed - Opened by milanmlft over 2 years ago - 1 comment

#38 - How to use the aggregateFeatures and msqrob functions

Issue - State: open - Opened by mbonhomme over 2 years ago - 8 comments

#37 - Updated link to QFeatures vignette

Pull Request - State: closed - Opened by cvanderaa over 2 years ago

#36 - MsqRobHurdle

Issue - State: open - Opened by JobbeG over 2 years ago - 7 comments

#35 - error in cptac tutorial commands

Issue - State: closed - Opened by PB-Shinde almost 3 years ago

#34 - installation issue with dependancies

Issue - State: closed - Opened by PB-Shinde almost 3 years ago - 9 comments

#33 - msqrob error

Issue - State: open - Opened by cdlawless almost 3 years ago - 10 comments

#32 - Issues with vignette example

Issue - State: closed - Opened by patruong about 3 years ago - 5 comments

#31 - Fix vignette

Pull Request - State: closed - Opened by milanmlft over 3 years ago

#30 - Update actions: use Bioc-3.14, enable Windows + Mac again

Pull Request - State: closed - Opened by milanmlft over 3 years ago - 2 comments

#29 - Various minor fixes

Pull Request - State: closed - Opened by milanmlft almost 4 years ago

#28 - Add check-bioc GHA

Pull Request - State: closed - Opened by milanmlft almost 4 years ago

#27 - Package capabilites

Issue - State: open - Opened by ococrook about 4 years ago - 1 comment

#26 - Installation failed

Issue - State: closed - Opened by mchiapello about 4 years ago - 3 comments

#25 - depend on (renamed) QFeatures

Pull Request - State: closed - Opened by lgatto over 4 years ago

#24 - boost unit tests

Issue - State: open - Opened by ococrook over 4 years ago

#23 - Olly edits

Pull Request - State: closed - Opened by ococrook over 4 years ago - 1 comment

#22 - msqrob Hurdle method fully implemented

Pull Request - State: closed - Opened by ococrook over 4 years ago

#21 - hurdle method fully implemented please review

Issue - State: open - Opened by statOmics over 4 years ago - 1 comment

#20 - vignettes Filtering

Issue - State: open - Opened by statOmics over 4 years ago

#19 - Including ecoli spike-in study in msdata

Issue - State: open - Opened by statOmics over 4 years ago

#18 - Update to StatModel

Issue - State: closed - Opened by lgatto over 4 years ago - 1 comment

#17 - place holder's within .Statmodel

Issue - State: closed - Opened by ococrook over 4 years ago

#16 - Olly edits

Pull Request - State: closed - Opened by ococrook over 4 years ago - 3 comments

#15 - warnings in hurdle method

Issue - State: closed - Opened by ococrook over 4 years ago - 2 comments
Labels: documentation

#14 - Error in Msqob

Issue - State: closed - Opened by ococrook almost 5 years ago - 4 comments
Labels: duplicate

#13 - bplapply issue

Issue - State: closed - Opened by ococrook almost 5 years ago - 4 comments
Labels: bug

#12 - tidy up cptac rmd

Pull Request - State: closed - Opened by ococrook almost 5 years ago

#11 - Dependecy issues

Issue - State: closed - Opened by ococrook almost 5 years ago - 4 comments

#10 - Dependecy issues

Issue - State: closed - Opened by ococrook almost 5 years ago - 1 comment

#9 - fix errors, warnings and notes

Pull Request - State: closed - Opened by ococrook about 5 years ago

#8 - re-writing of msqrob function

Pull Request - State: closed - Opened by ococrook about 5 years ago

#7 - fix rmd files + some cosmetic updates

Pull Request - State: closed - Opened by ococrook about 5 years ago

#6 - first draft of msqrob2 package working on simple example

Issue - State: closed - Opened by statOmics about 5 years ago - 9 comments

#5 - add StatModel class + show

Pull Request - State: closed - Opened by ococrook about 5 years ago

#4 - Input on structure for models slot in row data featuresClass

Issue - State: closed - Opened by statOmics about 5 years ago - 6 comments

#3 - cptac A vs B test data

Issue - State: closed - Opened by lgatto about 5 years ago

#2 - Transfer this repo to statOmics

Issue - State: closed - Opened by lgatto about 5 years ago

#1 - Plan based on the discussions at EuroBioc2019

Issue - State: closed - Opened by lgatto about 5 years ago - 1 comment