stanstrup/qc4metabolomics issues and pull requests

#53 - add to log why a file is to be ignored

Issue - State: open - Opened by stanstrup 6 months ago

#52 - trackcmp: separate modes automatically in plots

Issue - State: open - Opened by stanstrup 6 months ago

#51 - change to new xcms API in TrackCmp

Issue - State: open - Opened by stanstrup 6 months ago

#50 - add compounds to the demo

Issue - State: open - Opened by stanstrup 6 months ago

#49 - contaminants: the contaminants are hardcoded in the sql. Use real file.

Issue - State: closed - Opened by stanstrup 6 months ago

#48 - Contaminant heatmap is mixing modes. see demo

Issue - State: closed - Opened by stanstrup 6 months ago

#47 - make an run-able example

Issue - State: closed - Opened by stanstrup 6 months ago - 1 comment

#46 - management module

Issue - State: open - Opened by stanstrup 6 months ago

#45 - Contaminants: get average per hour/d and plot that instead so we have consistent bins

Issue - State: open - Opened by stanstrup 6 months ago

#44 - better error handling in file_info if mzML is malformed

Issue - State: closed - Opened by stanstrup 7 months ago

#43 - make a function for adding to ignore list

Issue - State: open - Opened by stanstrup over 2 years ago

#42 - contaminants: Time view is mixing modes

Issue - State: closed - Opened by stanstrup over 2 years ago - 1 comment

#41 - Better contaminant pic

Issue - State: open - Opened by stanstrup over 2 years ago

#40 - delay pull on contaminant tab

Issue - State: open - Opened by stanstrup over 2 years ago

#39 - Faster pulling of contaminant data

Issue - State: closed - Opened by stanstrup over 2 years ago - 1 comment

#38 - move settings to environmental variables and pass them through docker-compose

Issue - State: open - Opened by stanstrup over 2 years ago

#37 - in the debug dialog change from packrat to renv

Issue - State: closed - Opened by stanstrup over 2 years ago

#36 - check that files exist before trying to convert them!

Issue - State: closed - Opened by stanstrup almost 4 years ago - 1 comment

#35 - Control panel

Issue - State: open - Opened by stanstrup over 5 years ago

#34 - move css external

Issue - State: open - Opened by stanstrup over 5 years ago

#33 - something wrong in production graph

Issue - State: closed - Opened by stanstrup over 5 years ago

#24 - Investigate ShinyProxy

Issue - State: open - Opened by stanstrup over 5 years ago

#23 - Use flock

Issue - State: closed - Opened by stanstrup over 5 years ago - 1 comment

#23 - Use flock

Issue - State: closed - Opened by stanstrup over 5 years ago - 1 comment

#22 - make docker image that can be downloaded

Issue - State: open - Opened by stanstrup over 5 years ago

#21 - dplyr 0.8.0

Issue - State: closed - Opened by stanstrup over 5 years ago

#21 - dplyr 0.8.0

Issue - State: closed - Opened by stanstrup over 5 years ago

#20 - move init to processing script

Issue - State: closed - Opened by stanstrup over 5 years ago

#20 - move init to processing script

Issue - State: closed - Opened by stanstrup over 5 years ago

#19 - Best way to handle network in docker?

Issue - State: closed - Opened by stanstrup over 5 years ago - 1 comment

#18 - Trouble setting up the Shiny app and MySQL database

Issue - State: closed - Opened by etrh over 6 years ago - 3 comments

#18 - Trouble setting up the Shiny app and MySQL database

Issue - State: closed - Opened by etrh over 6 years ago - 3 comments

#17 - No way to install the MetabolomiQCsR package (massageR is missing)

Issue - State: closed - Opened by etrh almost 7 years ago - 1 comment

#17 - No way to install the MetabolomiQCsR package (massageR is missing)

Issue - State: closed - Opened by etrh almost 7 years ago - 1 comment

#16 - wrap in docker

Issue - State: closed - Opened by stanstrup almost 8 years ago

#16 - wrap in docker

Issue - State: closed - Opened by stanstrup almost 8 years ago

#15 - Productivity module

Issue - State: closed - Opened by stanstrup almost 8 years ago - 1 comment

#15 - Productivity module

Issue - State: closed - Opened by stanstrup almost 8 years ago - 1 comment

#14 - Shiny scheduler

Issue - State: closed - Opened by stanstrup about 8 years ago - 1 comment

#14 - Shiny scheduler

Issue - State: closed - Opened by stanstrup about 8 years ago - 1 comment

#13 - Agilent mass peak cutoff check

Issue - State: open - Opened by stanstrup over 8 years ago

#13 - Agilent mass peak cutoff check

Issue - State: open - Opened by stanstrup over 8 years ago

#12 - ensure safe sql in server_std_cmp

Issue - State: open - Opened by stanstrup over 8 years ago

#12 - ensure safe sql in server_std_cmp

Issue - State: open - Opened by stanstrup over 8 years ago

#11 - ensure that values are valid in std_cmp before attempting db write

Issue - State: closed - Opened by stanstrup over 8 years ago

#11 - ensure that values are valid in std_cmp before attempting db write

Issue - State: closed - Opened by stanstrup over 8 years ago

#10 - Basic run stats based on list of standards

Issue - State: closed - Opened by stanstrup over 8 years ago

#10 - Basic run stats based on list of standards

Issue - State: closed - Opened by stanstrup over 8 years ago

#9 - Better distance measure for Untargeted contamination finder

Issue - State: closed - Opened by stanstrup over 8 years ago - 1 comment

#8 - Basic shiny app to add modules to

Issue - State: closed - Opened by stanstrup over 8 years ago

#8 - Basic shiny app to add modules to

Issue - State: closed - Opened by stanstrup over 8 years ago

#7 - PCA of untargeted data

Issue - State: open - Opened by stanstrup over 8 years ago

#7 - PCA of untargeted data

Issue - State: open - Opened by stanstrup over 8 years ago

#6 - Untargeted contamination finder

Issue - State: closed - Opened by stanstrup over 8 years ago

#6 - Untargeted contamination finder

Issue - State: closed - Opened by stanstrup over 8 years ago

#5 - Vendor format to converted files on server

Issue - State: closed - Opened by stanstrup over 8 years ago - 1 comment

#5 - Vendor format to converted files on server

Issue - State: closed - Opened by stanstrup over 8 years ago - 1 comment

#4 - XCMS untargeted pre-processing

Issue - State: open - Opened by stanstrup over 8 years ago

#4 - XCMS untargeted pre-processing

Issue - State: open - Opened by stanstrup over 8 years ago

#3 - Targeted contamination finder for raw data

Issue - State: closed - Opened by stanstrup over 8 years ago

#3 - Targeted contamination finder for raw data

Issue - State: closed - Opened by stanstrup over 8 years ago

#2 - Define database structure

Issue - State: closed - Opened by stanstrup over 8 years ago

#2 - Define database structure

Issue - State: closed - Opened by stanstrup over 8 years ago

#1 - Flow diagram of the whole system

Issue - State: open - Opened by stanstrup over 8 years ago

#1 - Flow diagram of the whole system

Issue - State: open - Opened by stanstrup over 8 years ago

GitHub / stanstrup/qc4metabolomics issues and pull requests