Ecosyste.ms: Issues

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GitHub / stanstrup/predret issues and pull requests

#86 - mongoDB connection

Issue - State: closed - Opened by margheritacurti about 1 year ago - 1 comment

#85 - the application unexpectedly exited

Issue - State: open - Opened by julienparinet1 over 1 year ago - 1 comment

#85 - the application unexpectedly exited

Issue - State: open - Opened by julienparinet1 over 1 year ago - 1 comment

#84 - Failure to make registration for the website

Issue - State: open - Opened by YANGJJ93MS almost 2 years ago - 1 comment

#84 - Failure to make registration for the website

Issue - State: open - Opened by YANGJJ93MS almost 2 years ago - 1 comment

#83 - Run Time Estimate

Issue - State: closed - Opened by angepoch about 3 years ago - 3 comments

#83 - Run Time Estimate

Issue - State: closed - Opened by angepoch about 3 years ago - 3 comments

#82 - Unable to delete "selected data"

Issue - State: open - Opened by CBMollerup about 4 years ago - 4 comments

#81 - How to run the PredRet within R?

Issue - State: closed - Opened by Danissss about 5 years ago - 6 comments
Labels: question

#80 - upload error

Issue - State: open - Opened by HansVissers about 5 years ago - 14 comments

#80 - upload error

Issue - State: open - Opened by HansVissers about 5 years ago - 14 comments

#78 - Upload Data Error

Issue - State: closed - Opened by qaporter almost 6 years ago - 1 comment

#78 - Upload Data Error

Issue - State: closed - Opened by qaporter almost 6 years ago - 1 comment

#77 - Retention time prediction tool "socket hang up" error

Issue - State: closed - Opened by jonstrutz11 almost 6 years ago - 3 comments

#77 - Retention time prediction tool "socket hang up" error

Issue - State: closed - Opened by jonstrutz11 almost 6 years ago - 3 comments

#76 - “No mongoDB connection”

Issue - State: closed - Opened by Dorrain over 6 years ago - 2 comments

#75 - The application unexpectedly exited.

Issue - State: closed - Opened by soallard almost 7 years ago - 5 comments

#75 - The application unexpectedly exited.

Issue - State: closed - Opened by soallard almost 7 years ago - 5 comments

#74 - Server appears busy

Issue - State: closed - Opened by Dorrain about 7 years ago - 1 comment

#74 - Server appears busy

Issue - State: closed - Opened by Dorrain about 7 years ago - 1 comment

#73 - No mongoDB connection

Issue - State: closed - Opened by Dorrain about 7 years ago - 1 comment

#73 - No mongoDB connection

Issue - State: closed - Opened by Dorrain about 7 years ago - 1 comment

#72 - update rpubchem on server

Issue - State: open - Opened by stanstrup over 7 years ago

#71 - Problem of Inchi reading

Issue - State: closed - Opened by Pmicheau over 7 years ago - 1 comment

#71 - Problem of Inchi reading

Issue - State: closed - Opened by Pmicheau over 7 years ago - 1 comment

#70 - Invalid inchi are ignored by obabel

Issue - State: open - Opened by stanstrup over 7 years ago

#70 - Invalid inchi are ignored by obabel

Issue - State: open - Opened by stanstrup over 7 years ago

#69 - No mongoDB connection!

Issue - State: closed - Opened by dicarez over 7 years ago - 7 comments

#69 - No mongoDB connection!

Issue - State: closed - Opened by dicarez over 7 years ago - 7 comments

#68 - Make it impossible to add data to systems you don't "own"

Issue - State: open - Opened by stanstrup about 8 years ago

#68 - Make it impossible to add data to systems you don't "own"

Issue - State: open - Opened by stanstrup about 8 years ago

#67 - switch to webchem package

Issue - State: open - Opened by stanstrup about 8 years ago

#66 - Potential race condition: systems_in_db() called twice

Issue - State: open - Opened by sneumann over 8 years ago - 1 comment

#65 - Provide alternative functions if no wordpress is used

Pull Request - State: closed - Opened by sneumann over 8 years ago - 1 comment

#64 - Update website with complete guide including screenshots

Issue - State: closed - Opened by stanstrup over 9 years ago
Labels: enhancement

#63 - re-write to purge suspects at some useful point

Issue - State: open - Opened by stanstrup over 9 years ago
Labels: bug, enhancement, ready

#62 - convert long script to functions (server_upload_tab_process_data.R)

Issue - State: closed - Opened by stanstrup over 9 years ago - 1 comment

#61 - add public function to plot models

Issue - State: closed - Opened by stanstrup over 9 years ago - 1 comment
Labels: enhancement

#60 - if CIs are very narrow don't mark compounds as suspect

Issue - State: closed - Opened by stanstrup over 9 years ago
Labels: bug

#59 - clean up sanity check of upload data and convert long script to functions

Issue - State: open - Opened by stanstrup over 9 years ago
Labels: enhancement, ready

#58 - Use ontologies for chromatographic systems

Issue - State: open - Opened by stanstrup over 9 years ago - 1 comment
Labels: enhancement

#57 - cyclic re-read of database in the add systems dialog

Issue - State: open - Opened by stanstrup over 9 years ago
Labels: bug, ready

#56 - investigate if scam can replace gam+bootstrapping

Issue - State: open - Opened by stanstrup over 9 years ago
Labels: enhancement

#55 - consider changing to the scam package

Issue - State: closed - Opened by stanstrup over 9 years ago - 1 comment
Labels: enhancement

#54 - CIs are not "multiple testing" corrected

Issue - State: closed - Opened by stanstrup over 9 years ago
Labels: bug, enhancement, help wanted, wontfix

#53 - optimize sigmoidal function parameters

Issue - State: open - Opened by stanstrup over 9 years ago
Labels: enhancement, help wanted, ready

#52 - Check if the number of bootstraps can be reduced

Issue - State: closed - Opened by stanstrup over 9 years ago - 1 comment
Labels: enhancement

#51 - no longer makes sense to call it loess_boot

Issue - State: open - Opened by stanstrup almost 10 years ago
Labels: bug

#50 - Add functions for users to query data

Issue - State: closed - Opened by stanstrup almost 10 years ago
Labels: enhancement

#49 - purge prediction stats when purging predictions

Issue - State: closed - Opened by stanstrup almost 10 years ago
Labels: enhancement

#48 - Make button to purge models

Issue - State: closed - Opened by stanstrup almost 10 years ago
Labels: enhancement

#47 - Check if structural similarity can be used to predict RT

Issue - State: closed - Opened by stanstrup almost 10 years ago - 1 comment
Labels: enhancement

#46 - Move functions into a package

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#45 - system templates

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#44 - better consistency between field names

Issue - State: open - Opened by stanstrup over 10 years ago
Labels: bug, enhancement, ready

#43 - Make tab where all data can be downloaded

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#42 - add structure based prediction

Issue - State: closed - Opened by stanstrup over 10 years ago - 3 comments
Labels: enhancement

#41 - Make compound list filters

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#40 - Make a list of suspect values for the user to inspect

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#39 - separate RP and HILIC systems.

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: enhancement

#38 - Add progress indicator to upload page

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#37 - Better detection of presence of the correct columns

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug

#36 - Make sure a system cannot be added without a name

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#35 - Add statistics to prediction page

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#34 - Display local times

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#33 - Make action button on upload page

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug

#32 - Clean up upload page

Issue - State: closed - Opened by stanstrup over 10 years ago - 2 comments
Labels: enhancement

#31 - User app too slow

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#30 - Scheduled re-calculation of models.

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement, ready

#29 - Pre-compute predictions

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#28 - Find a way to get prediction intervals instead of CI of the fit

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: enhancement, help wanted

#27 - Ignore suspect values

Issue - State: closed - Opened by stanstrup over 10 years ago - 4 comments
Labels: enhancement

#26 - Make load balancer app

Issue - State: closed - Opened by stanstrup over 10 years ago - 2 comments
Labels: enhancement

#25 - use less points for plotting

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: enhancement

#24 - NA values are written as -2147483648 in the rt database for pubchem id.

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug, invalid

#23 - Check that file encoding settings allows UTF

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug

#22 - parLapply breaks in boot2ci with lots of data

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug, help wanted

#21 - Only allow admin accounts to use admin app.

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#20 - writing of loess.boot to mongodb fails when using shiny. not when manually executing the script

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug

#19 - better model statistics

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: enhancement

#18 - model stats: rt vs. error plot

Issue - State: open - Opened by stanstrup over 10 years ago
Labels: enhancement

#17 - model stats: average error table

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#16 - Error in eval(expr, envir, enclos) : attempt to apply non-function

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: invalid

#15 - retdb: figure out how to handle diastereomers

Issue - State: open - Opened by stanstrup over 10 years ago - 1 comment
Labels: enhancement, help wanted

#14 - retdb: download button on manage tab

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#13 - retdb: check for duplicates

Issue - State: closed - Opened by stanstrup over 10 years ago

#12 - retdb: make sure inchi's don't contain stereo info

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#11 - retdb: upload tab: separate hard errors (1) and warnings(2) in output

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#10 - retdb: selection of rows don't work when using the dropdown menus

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug, help wanted

#9 - retdb: renderUI/uiOutput doesn't work in newest shiny

Issue - State: closed - Opened by stanstrup over 10 years ago - 1 comment
Labels: bug

#8 - Automatically get inchi from pubchem

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#7 - retdb: remove rows with no rt data

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#6 - don't write system name to db. use system id only

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#5 - retdb: make tab to edit own data

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: enhancement

#4 - retdb: check that all rows have either an inchi key or a pubchem id

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#3 - check that all systems in the input csv are in the db

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#2 - check that user is logged in before doing anything

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug

#1 - retdb: allow only to edit own system

Issue - State: closed - Opened by stanstrup over 10 years ago
Labels: bug