Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / stan-dev/cmdstanr issues and pull requests

#936 - Allow algorithms to use draws of model fits for inits

Pull Request - State: closed - Opened by SteveBronder 8 months ago - 12 comments

#935 - Fix incorrect format of inv_metric when only 1 parameter in model

Pull Request - State: closed - Opened by venpopov 8 months ago - 1 comment

#934 - Wrong inv_metric format passed to cmdstan with only 1 parameter

Issue - State: closed - Opened by venpopov 8 months ago - 2 comments
Labels: bug

#933 - Bump r-lib/actions from 2.7.2 to 2.8.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#932 - Expose new stan args

Pull Request - State: closed - Opened by venpopov 8 months ago - 15 comments

#931 - Add the new Stan 2.34 arguments save_metric and save_cmdstan_config

Issue - State: closed - Opened by venpopov 8 months ago - 2 comments
Labels: feature

#929 - Clarify in doc that for MCMC `output_dir` contains one file per chain

Pull Request - State: closed - Opened by jgabry 8 months ago - 1 comment

#928 - Make documentation of `$sample()` method of a `CmdStanModel` more explicit about output

Issue - State: closed - Opened by odros 9 months ago - 1 comment
Labels: documentation

#927 - Within-chain parallelization in Ubuntu (WSL) not working.

Issue - State: closed - Opened by qymera0 9 months ago - 2 comments
Labels: bug

#926 - Syntax error when adding a Gaussian Process term

Issue - State: closed - Opened by FredericBlum 9 months ago - 3 comments
Labels: bug

#925 - NA dimensions for complex and tuple types

Issue - State: open - Opened by SteveBronder 9 months ago
Labels: bug

#924 - Bump r-lib/actions from 2.7.2 to 2.8.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies

#923 - Update doc and tests after latest loo pkg release

Pull Request - State: closed - Opened by jgabry 9 months ago - 2 comments

#922 - FreeBSD support

Pull Request - State: closed - Opened by tenomoto 9 months ago - 6 comments

#921 - using both RStan and CmdStanR in quarto - code block tag `cmdstan`

Issue - State: open - Opened by mitzimorris 9 months ago - 8 comments
Labels: bug

#920 - Possible inefficency of `$unconstrain_variables()`

Issue - State: closed - Opened by crsh 9 months ago - 3 comments

#919 - Bump Vampire/setup-wsl from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#917 - Bump r-lib/actions from 2.6.5 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#916 - Issues Using cmdstanr to install cmdstan

Issue - State: closed - Opened by Gabe-Inoshita 10 months ago - 5 comments
Labels: bug

#915 - cmdstan_model() not compiling if cpp_options(stan_threads=TRUE)

Issue - State: closed - Opened by reuning 10 months ago - 3 comments
Labels: bug

#914 - Turn off "Compiling additional model methods..." message when calling `init_model_methods`

Issue - State: open - Opened by ben18785 10 months ago - 1 comment
Labels: feature

#913 - Global option for turning off warning for partial initial values

Pull Request - State: closed - Opened by jgabry 10 months ago - 9 comments

#912 - Be able to silence warning about init values being set only for subset of parameters

Issue - State: closed - Opened by ben18785 10 months ago - 5 comments
Labels: feature

#911 - Fix typo in README

Pull Request - State: closed - Opened by jgabry 10 months ago - 1 comment
Labels: documentation

#910 - Fix tests with v2.34.1

Pull Request - State: closed - Opened by andrjohns 10 months ago - 2 comments

#909 - Add check for invalid GitHub PAT to internal function

Issue - State: open - Opened by wpetry 10 months ago - 2 comments
Labels: feature

#908 - Update broken link in opencl.Rmd

Pull Request - State: closed - Opened by eipi10 10 months ago - 1 comment

#908 - Update broken link in opencl.Rmd

Pull Request - State: closed - Opened by eipi10 10 months ago - 1 comment

#907 - Multiple inits for multi-path Pathfinder?

Issue - State: open - Opened by colinorourke 10 months ago - 7 comments
Labels: bug

#906 - Bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#906 - Bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#905 - Fix test failures under cmdstan 2.34

Pull Request - State: closed - Opened by andrjohns 10 months ago - 2 comments

#904 - Setting `compile_model_methods=TRUE` causes a staged installation to fail

Issue - State: open - Opened by ben18785 10 months ago - 2 comments
Labels: bug

#903 - update pathfinder args for psis_resample and lp_calculate

Pull Request - State: closed - Opened by SteveBronder 10 months ago - 4 comments

#902 - issues of include stan math library in compile

Issue - State: closed - Opened by MSQ-123 10 months ago - 1 comment
Labels: bug

#901 - Add support for new Pathfinder options available in CmdStan 2.34

Issue - State: closed - Opened by avehtari 10 months ago - 1 comment
Labels: feature

#900 - Store the information of how CmdStan was called

Issue - State: open - Opened by avehtari 10 months ago - 4 comments
Labels: feature

#899 - Drop RcppEigen dependency, implement basic Eigen -> C++ interop

Pull Request - State: closed - Opened by andrjohns 10 months ago - 1 comment

#899 - Drop RcppEigen dependency, implement basic Eigen -> C++ interop

Pull Request - State: closed - Opened by andrjohns 10 months ago - 1 comment

#898 - Unable to set `compile_model_methods=TRUE` in `install.libs.R` file

Issue - State: closed - Opened by ben18785 10 months ago - 1 comment
Labels: bug

#897 - Add show_messages and show_exceptions arguments to all methods

Pull Request - State: closed - Opened by andrjohns 11 months ago - 2 comments

#896 - Using `num_threads` without `STAN_THREADS` should give warning

Issue - State: open - Opened by andrjohns 11 months ago - 1 comment
Labels: bug

#896 - Using `num_threads` without `STAN_THREADS` should give warning

Issue - State: open - Opened by andrjohns 11 months ago - 1 comment
Labels: bug

#895 - Use cmdstan for parallel chains

Issue - State: open - Opened by andrjohns 11 months ago - 1 comment
Labels: feature

#895 - Use cmdstan for parallel chains

Issue - State: open - Opened by andrjohns 11 months ago - 5 comments
Labels: feature

#894 - Compile model methods once and reuse for all models

Pull Request - State: open - Opened by andrjohns 11 months ago - 14 comments

#893 - Prepare v0.7.1 bugfix-release

Pull Request - State: closed - Opened by andrjohns 11 months ago - 1 comment

#892 - Align ebfmi threshold with cmdstan

Pull Request - State: closed - Opened by andrjohns 11 months ago - 2 comments

#892 - Align ebfmi threshold with cmdstan

Pull Request - State: closed - Opened by andrjohns 11 months ago - 2 comments

#891 - Utilize multiple GPUs

Issue - State: open - Opened by thk686 11 months ago - 1 comment
Labels: feature

#891 - Utilize multiple GPUs

Issue - State: open - Opened by thk686 11 months ago - 1 comment
Labels: feature

#890 - Allow latest version check to take retries arg

Pull Request - State: closed - Opened by andrjohns 11 months ago

#890 - Allow latest version check to take retries arg

Pull Request - State: closed - Opened by andrjohns 11 months ago

#889 - Loading `cmdstanr` takes a very long time (over 30 seconds) on macOS

Issue - State: closed - Opened by mattocci27 11 months ago - 2 comments
Labels: bug

#889 - Loading `cmdstanr` takes a very long time (over 30 seconds) on macOS

Issue - State: closed - Opened by mattocci27 11 months ago - 2 comments
Labels: bug

#888 - make multicore support more consistent between pathfinder and sampling algorithms

Issue - State: closed - Opened by wpetry 11 months ago - 3 comments
Labels: feature

#888 - make multicore support more consistent between pathfinder and sampling algorithms

Issue - State: closed - Opened by wpetry 11 months ago - 3 comments
Labels: feature

#887 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#886 - `$unconstrain_draws()` returns draws format

Pull Request - State: closed - Opened by andrjohns 11 months ago - 7 comments

#886 - `$unconstrain_draws()` returns draws format

Pull Request - State: closed - Opened by andrjohns 11 months ago - 7 comments

#885 - Website v0.7.0

Pull Request - State: closed - Opened by jgabry 12 months ago - 1 comment

#884 - Silence output message from optimization

Issue - State: closed - Opened by zhengchencai 12 months ago - 3 comments
Labels: feature

#883 - cmdstanr broken if used from make

Issue - State: closed - Opened by wds15 12 months ago - 11 comments
Labels: bug

#882 - How to update cmdstanr?

Issue - State: closed - Opened by beew 12 months ago - 5 comments

#882 - How to update cmdstanr?

Issue - State: closed - Opened by beew 12 months ago - 5 comments

#881 - fix: #770, get_cmdstan_flags('STANCFLAGS') in recursive make extraneo…

Pull Request - State: closed - Opened by pearsonca about 1 year ago - 13 comments

#881 - fix: #770, get_cmdstan_flags('STANCFLAGS') in recursive make extraneo…

Pull Request - State: closed - Opened by pearsonca about 1 year ago - 13 comments

#880 - Website issue with "vignettes" and "functions" where it shows old version of cmdstanr

Issue - State: closed - Opened by spinkney about 1 year ago - 1 comment
Labels: bug

#879 - Rename `jacobian_adjustment` argument to `jacobian`

Pull Request - State: closed - Opened by jgabry about 1 year ago - 2 comments

#879 - Rename `jacobian_adjustment` argument to `jacobian`

Pull Request - State: closed - Opened by jgabry about 1 year ago - 2 comments

#878 - Pathfinder doc / behavior issues

Issue - State: open - Opened by avehtari about 1 year ago - 9 comments

#878 - Pathfinder doc / behavior issues

Issue - State: open - Opened by avehtari about 1 year ago - 10 comments

#877 - jacobian vs jacobian_adjustment

Issue - State: closed - Opened by avehtari about 1 year ago - 4 comments
Labels: documentation

#877 - jacobian vs jacobian_adjustment

Issue - State: closed - Opened by avehtari about 1 year ago - 4 comments
Labels: documentation

#876 - Add method to create inits from fit or draws objects

Issue - State: closed - Opened by avehtari about 1 year ago - 11 comments
Labels: feature

#875 - Improve Pathfinder doc

Pull Request - State: closed - Opened by avehtari about 1 year ago

#875 - Improve Pathfinder doc

Pull Request - State: closed - Opened by avehtari about 1 year ago

#874 - Mention Laplace and Pathfinder in init option

Issue - State: closed - Opened by avehtari about 1 year ago - 4 comments
Labels: documentation

#873 - Add an option to unconstrain_draws to return posterior draws object

Issue - State: closed - Opened by avehtari about 1 year ago - 5 comments
Labels: feature

#872 - init_model_methods doesn't work with CmdStanPathfinder object

Issue - State: closed - Opened by avehtari about 1 year ago - 1 comment
Labels: bug

#872 - init_model_methods doesn't work with CmdStanPathfinder object

Issue - State: closed - Opened by avehtari about 1 year ago - 1 comment
Labels: bug

#871 - Prepare release of CmdStanR v0.7.0

Pull Request - State: closed - Opened by jgabry about 1 year ago - 4 comments

#870 - Enable caching of compiled Stan functions

Issue - State: open - Opened by wds15 about 1 year ago
Labels: feature

#869 - Bump r-lib/actions from 2.6.4 to 2.6.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#869 - Bump r-lib/actions from 2.6.4 to 2.6.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#868 - Latest RStudio version 2023.09.1+494 crashes cmdstanr and brms

Issue - State: closed - Opened by hauselin about 1 year ago - 8 comments
Labels: bug

#867 - Add pathfinder example to vignette

Issue - State: closed - Opened by jgabry about 1 year ago
Labels: documentation

#866 - Add option for installing from release archive

Pull Request - State: closed - Opened by andrjohns about 1 year ago - 1 comment

#865 - install_cmdstan() fails because it can't be downloaded

Issue - State: closed - Opened by JAQuent about 1 year ago - 2 comments
Labels: feature

#864 - Error：Native call to `processx_exec` failed

Issue - State: closed - Opened by 01litterbear about 1 year ago - 2 comments
Labels: bug

#864 - Error：Native call to `processx_exec` failed

Issue - State: closed - Opened by 01litterbear about 1 year ago - 2 comments
Labels: bug

#863 - Add dedicated hpp generation step for future cmdstan compatibility

Pull Request - State: closed - Opened by andrjohns about 1 year ago - 7 comments

#863 - Add dedicated hpp generation step for future cmdstan compatibility

Pull Request - State: closed - Opened by andrjohns about 1 year ago - 7 comments

#862 - FR: argument to enable redirection of stdout &| stderr to file

Issue - State: open - Opened by mike-lawrence about 1 year ago
Labels: feature

#862 - FR: argument to enable redirection of stdout &| stderr to file

Issue - State: open - Opened by mike-lawrence about 1 year ago
Labels: feature

#861 - Add support/tests for exporting functions with complex types

Pull Request - State: closed - Opened by andrjohns about 1 year ago - 1 comment

#861 - Add support/tests for exporting functions with complex types

Pull Request - State: closed - Opened by andrjohns about 1 year ago - 1 comment

#860 - Add support/tests for exposing functions with tuples

Pull Request - State: closed - Opened by andrjohns about 1 year ago - 3 comments