Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / stajichlab/AAFTF issues and pull requests
#26 - AAFTF pipeline exiting when mito fails
Issue -
State: closed - Opened by Kata-Pa 5 months ago
- 3 comments
#25 - masurca polca.sh breaks with recent samtools
Issue -
State: closed - Opened by hyphaltip 11 months ago
- 1 comment
Labels: bug
#24 - Update environment.yml with pip depend
Pull Request -
State: closed - Opened by hyphaltip 11 months ago
#23 - Feature fcs gx purge
Pull Request -
State: closed - Opened by hyphaltip 12 months ago
- 1 comment
#22 - Do vecscreen and sourpurge have similar functions?
Issue -
State: closed - Opened by maruiqi0710 about 1 year ago
- 6 comments
#21 - error when running AAFTF filter and AAFTF vecscreen
Issue -
State: closed - Opened by njliangdong about 1 year ago
- 5 comments
#20 - [Enhancement] Assembly for Nanopore reads
Issue -
State: open - Opened by llk578496 about 1 year ago
- 2 comments
#19 - AAFTF pipeline always fails at vecscreen step
Issue -
State: closed - Opened by rfitak over 1 year ago
- 2 comments
#18 - Pipeline fix
Pull Request -
State: closed - Opened by nextgenusfs about 2 years ago
#17 - Sourmash gtdbr07 rs207 update
Pull Request -
State: closed - Opened by hyphaltip about 2 years ago
#16 - Mito assemble
Pull Request -
State: closed - Opened by nextgenusfs over 2 years ago
#15 - sourmash LCA database update url?
Issue -
State: closed - Opened by nextgenusfs almost 3 years ago
- 18 comments
#14 - Add racon as polishing step
Issue -
State: open - Opened by hyphaltip almost 3 years ago
Labels: enhancement
#13 - Out of Memory on default pilon run
Issue -
State: closed - Opened by hyphaltip over 3 years ago
- 1 comment
#12 - Fix namespace
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#11 - After to setup of the requirements, how to install? Is it necessary a sudo user?
Issue -
State: closed - Opened by nickolasmenezes over 3 years ago
- 4 comments
#10 - Add GC% in 'assess' command
Issue -
State: closed - Opened by hyphaltip almost 4 years ago
- 1 comment
#9 - support other assemblers: dipspades
Issue -
State: open - Opened by hyphaltip over 4 years ago
- 1 comment
Labels: enhancement
#8 - Change mitochondrial genome database FTP link
Pull Request -
State: closed - Opened by gamcil over 4 years ago
#7 - Integrate NCBI tax tool in screening
Issue -
State: open - Opened by hyphaltip over 4 years ago
- 2 comments
#6 - Specify version numbers of all sub-tools
Issue -
State: open - Opened by hyphaltip about 5 years ago
#5 - Merge no workdir to master
Pull Request -
State: closed - Opened by hyphaltip over 5 years ago
#4 - use bbduk.sh (BBMap) for filter step instead of bwa/bowtie matching reads
Issue -
State: closed - Opened by hyphaltip over 5 years ago
- 6 comments
#3 - Generate command list as top-level running
Issue -
State: open - Opened by hyphaltip over 5 years ago
- 1 comment
#2 - Support single-end and interleaved fastq data
Issue -
State: closed - Opened by hyphaltip over 5 years ago
- 3 comments
#1 - different gunzip/gzip options on osx/linux in vecscreen.py
Issue -
State: closed - Opened by hyphaltip almost 6 years ago
- 3 comments