Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / stajichlab/AAFTF issues and pull requests

#26 - AAFTF pipeline exiting when mito fails

Issue - State: closed - Opened by Kata-Pa 5 months ago - 3 comments

#25 - masurca polca.sh breaks with recent samtools

Issue - State: closed - Opened by hyphaltip 11 months ago - 1 comment
Labels: bug

#24 - Update environment.yml with pip depend

Pull Request - State: closed - Opened by hyphaltip 11 months ago

#23 - Feature fcs gx purge

Pull Request - State: closed - Opened by hyphaltip 12 months ago - 1 comment

#22 - Do vecscreen and sourpurge have similar functions?

Issue - State: closed - Opened by maruiqi0710 about 1 year ago - 6 comments

#21 - error when running AAFTF filter and AAFTF vecscreen

Issue - State: closed - Opened by njliangdong about 1 year ago - 5 comments

#20 - [Enhancement] Assembly for Nanopore reads

Issue - State: open - Opened by llk578496 about 1 year ago - 2 comments

#19 - AAFTF pipeline always fails at vecscreen step

Issue - State: closed - Opened by rfitak over 1 year ago - 2 comments

#18 - Pipeline fix

Pull Request - State: closed - Opened by nextgenusfs about 2 years ago

#17 - Sourmash gtdbr07 rs207 update

Pull Request - State: closed - Opened by hyphaltip about 2 years ago

#16 - Mito assemble

Pull Request - State: closed - Opened by nextgenusfs over 2 years ago

#15 - sourmash LCA database update url?

Issue - State: closed - Opened by nextgenusfs almost 3 years ago - 18 comments

#14 - Add racon as polishing step

Issue - State: open - Opened by hyphaltip almost 3 years ago
Labels: enhancement

#13 - Out of Memory on default pilon run

Issue - State: closed - Opened by hyphaltip over 3 years ago - 1 comment

#12 - Fix namespace

Pull Request - State: closed - Opened by gamcil over 3 years ago

#10 - Add GC% in 'assess' command

Issue - State: closed - Opened by hyphaltip almost 4 years ago - 1 comment

#9 - support other assemblers: dipspades

Issue - State: open - Opened by hyphaltip over 4 years ago - 1 comment
Labels: enhancement

#8 - Change mitochondrial genome database FTP link

Pull Request - State: closed - Opened by gamcil over 4 years ago

#7 - Integrate NCBI tax tool in screening

Issue - State: open - Opened by hyphaltip over 4 years ago - 2 comments

#6 - Specify version numbers of all sub-tools

Issue - State: open - Opened by hyphaltip about 5 years ago

#5 - Merge no workdir to master

Pull Request - State: closed - Opened by hyphaltip over 5 years ago

#4 - use bbduk.sh (BBMap) for filter step instead of bwa/bowtie matching reads

Issue - State: closed - Opened by hyphaltip over 5 years ago - 6 comments

#3 - Generate command list as top-level running

Issue - State: open - Opened by hyphaltip over 5 years ago - 1 comment

#2 - Support single-end and interleaved fastq data

Issue - State: closed - Opened by hyphaltip over 5 years ago - 3 comments

#1 - different gunzip/gzip options on osx/linux in vecscreen.py

Issue - State: closed - Opened by hyphaltip almost 6 years ago - 3 comments