Ecosyste.ms: Issues

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GitHub / sseyler/psanalysis issues and pull requests

#16 - Have PSA take advantage of new `MemoryReader` in MDA

Issue - State: open - Opened by sseyler about 8 years ago
Labels: Enhancement

#15 - Use nglviewer as a backend for visualizing nearest neighbor data

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Medium, Visualization

#14 - Switch to NumPy-style docs

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Docs, Priority-Medium, Difficulty-Easy

#13 - Get PSAnalysis working with Read The Docs

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Docs, Priority-Low, Difficulty-Easy

#13 - Get PSAnalysis working with Read The Docs

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Docs, Priority-Low, Difficulty-Easy

#12 - Implement a Python/NumPy function to compute Fréchet neighbors

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Hard, Algorithms

#11 - Code a Cython version of hausdorff_neighbors() function

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Medium, Performance

#10 - Improve the functionality of the `PSAIdentifier` class

Issue - State: open - Opened by sseyler over 8 years ago - 1 comment
Labels: Enhancement, Difficulty-Hard, Refactoring

#9 - Add interactive heat map feature for visualizing distance matrices

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Easy, Visualization

#8 - Make PSA objects persistent (related to Issues #5 and #7)

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Hard

#7 - Refactor or redesign PSA's class structure

Issue - State: open - Opened by sseyler over 8 years ago - 1 comment
Labels: Priority-High, Difficulty-Hard, Refactoring

#6 - PSA methods should pass dictionaries of keyword arguments to external functions

Issue - State: open - Opened by sseyler over 8 years ago - 1 comment
Labels: Priority-Medium, Difficulty-Medium, Refactoring

#5 - Add optional methods for doing parallelized distance calculations

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Hard, Performance

#4 - Convert some NumPy-based storage to pandas and/or h5py

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Priority-High, Difficulty-Medium, Data Storage

#3 - Add full test suite for PSA

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Priority-High, Difficulty-Hard, Testing

#2 - Implement code to calculate atomic displacements

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Low, Difficulty-Medium

#1 - Incorporate Cythonized path metric algorithms

Issue - State: open - Opened by sseyler over 8 years ago
Labels: Enhancement, Priority-Medium, Difficulty-Easy, Performance