ssciwr/sample_flow issues and pull requests

#100 - Possibility to modify 1 week timeframe until new samples are about to be sent in

Issue - State: open - Opened by LArnoldt over 1 year ago

#100 - Possibility to modify 1 week timeframe until new samples are about to be sent in

Issue - State: open - Opened by LArnoldt over 1 year ago

#99 - Upload of results files

Issue - State: closed - Opened by LArnoldt over 1 year ago

#98 - generate barcode

Issue - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#98 - generate barcode

Issue - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#97 - simplify upload files

Issue - State: closed - Opened by lkeegan over 1 year ago

#97 - simplify upload files

Issue - State: closed - Opened by lkeegan over 1 year ago

#96 - feedback text -> admin option

Issue - State: open - Opened by lkeegan over 1 year ago

#96 - feedback text -> admin option

Issue - State: open - Opened by lkeegan over 1 year ago

#95 - circuitseq -> SampleFlow

Issue - State: closed - Opened by lkeegan over 1 year ago

#95 - circuitseq -> SampleFlow

Issue - State: closed - Opened by lkeegan over 1 year ago

#94 - improve dev readme

Issue - State: closed - Opened by lkeegan over 1 year ago

#93 - Add password reset option

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 2 comments

#92 - Minor frontend improvements

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 2 comments

#92 - Minor frontend improvements

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 2 comments

#91 - Return a dict instead of a string from API endpoints

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#90 - Update docs and add node 20 to CI

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#90 - Update docs and add node 20 to CI

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#89 - update API notebook

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#89 - update API notebook

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#88 - allow unsucessful result upload

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#88 - allow unsucessful result upload

Pull Request - State: closed - Opened by lkeegan over 1 year ago - 1 comment

#87 - Permissions issue on ODCF analysis server

Issue - State: closed - Opened by EdGreen21 almost 2 years ago - 1 comment

#87 - Permissions issue on ODCF analysis server

Issue - State: closed - Opened by EdGreen21 almost 2 years ago - 1 comment

#86 - Placeholder: upload file with multiple fastas

Issue - State: closed - Opened by EdGreen21 almost 2 years ago - 2 comments

#86 - Placeholder: upload file with multiple fastas

Issue - State: closed - Opened by EdGreen21 almost 2 years ago - 2 comments

#85 - refactor endpoints that currently return a string to return a dict

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: implementation

#84 - result upload validation

Issue - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#84 - result upload validation

Issue - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#83 - update notebook to use new REST API url

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#83 - update notebook to use new REST API url

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#82 - Add feedback option "Sample did not work"

Issue - State: closed - Opened by LArnoldt almost 2 years ago - 3 comments

#82 - Add feedback option "Sample did not work"

Issue - State: closed - Opened by LArnoldt almost 2 years ago - 3 comments

#81 - Possiblity to reevaluate samples

Issue - State: closed - Opened by LArnoldt almost 2 years ago - 2 comments

#81 - Possiblity to reevaluate samples

Issue - State: closed - Opened by LArnoldt almost 2 years ago - 2 comments

#80 - Use nginx as reverse proxy for REST API

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#80 - Use nginx as reverse proxy for REST API

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#79 - Add concentration field to samples

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#79 - Add concentration field to samples

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#78 - Sample submission workflow

Issue - State: closed - Opened by LArnoldt almost 2 years ago - 2 comments

#78 - Sample submission workflow

Issue - State: closed - Opened by LArnoldt almost 2 years ago - 2 comments

#77 - frontend hides running options choice if <=2 options

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#76 - hide running options when <= 2

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#76 - hide running options when <= 2

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#75 - add date to backend logs

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#75 - add date to backend logs

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#74 - use filename as fallback description for snapgene reference sequences without a CustomMapLabel

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#74 - use filename as fallback description for snapgene reference sequences without a CustomMapLabel

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#73 - dna reference sequence `<unknown id>`

Issue - State: closed - Opened by lkeegan almost 2 years ago - 2 comments
Labels: bug

#73 - dna reference sequence `<unknown id>`

Issue - State: closed - Opened by lkeegan almost 2 years ago - 2 comments
Labels: bug

#72 - increase max file size upload limit to 384mb

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#72 - increase max file size upload limit to 384mb

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#71 - build & publish production docker images in CI

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#71 - build & publish production docker images in CI

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#70 - Add option for users to change password

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#70 - Add option for users to change password

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#69 - send email with result to user when they are uploaded

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#69 - send email with result to user when they are uploaded

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#68 - email results to users

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#68 - email results to users

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#67 - combine multiple flongle runs

Issue - State: open - Opened by EdGreen21 almost 2 years ago - 1 comment

#67 - combine multiple flongle runs

Issue - State: open - Opened by EdGreen21 almost 2 years ago - 1 comment

#66 - refactor samples tables in frontend

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#66 - refactor samples tables in frontend

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#65 - allow enter to click sample submit button

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#65 - allow enter to click sample submit button

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#64 - refactor ListItem in frontend

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#64 - refactor ListItem in frontend

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#63 - make login/signup form submit button trigger with enter keypress

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#63 - make login/signup form submit button trigger with enter keypress

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#62 - change password

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#62 - change password

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#61 - forgot my password link

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#61 - forgot my password link

Issue - State: closed - Opened by lkeegan almost 2 years ago
Labels: enhancement

#60 - add email activation step to signup

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#60 - add email activation step to signup

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#59 - when remaining samples is 0 also display a message explaining why

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#58 - API tokens remain valid when server restarts

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#58 - API tokens remain valid when server restarts

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#57 - improve parsing of reference sequence files

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#57 - improve parsing of reference sequence files

Pull Request - State: closed - Opened by lkeegan almost 2 years ago - 1 comment

#56 - refresh tokens for website?

Issue - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#56 - refresh tokens for website?

Issue - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#55 - long-lived JWT token for API access

Issue - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#55 - long-lived JWT token for API access

Issue - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#54 - add api token and results upload for admins

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#54 - add api token and results upload for admins

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#53 - frontend: go to login page if token expired

Issue - State: closed - Opened by lkeegan about 2 years ago
Labels: enhancement

#53 - frontend: go to login page if token expired

Issue - State: closed - Opened by lkeegan about 2 years ago
Labels: enhancement

#52 - refactor samples tables in frontend

Issue - State: closed - Opened by lkeegan about 2 years ago - 1 comment
Labels: implementation

#52 - refactor samples tables in frontend

Issue - State: closed - Opened by lkeegan about 2 years ago - 1 comment
Labels: implementation

#51 - support more reference sequence formats

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#51 - support more reference sequence formats

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#50 - add admin option to set last submission day

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#50 - add admin option to set last submission day

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#49 - don't display submit form when all samples taken

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#49 - don't display submit form when all samples taken

Pull Request - State: closed - Opened by lkeegan about 2 years ago - 1 comment

#48 - All 96 slots taken for this week

Issue - State: closed - Opened by LArnoldt about 2 years ago - 2 comments

#48 - All 96 slots taken for this week

Issue - State: closed - Opened by LArnoldt about 2 years ago - 2 comments

#47 - put reference sequences in subfolder inside samples.zip

Pull Request - State: closed - Opened by lkeegan about 2 years ago

GitHub / ssciwr/sample_flow issues and pull requests