ssciwr/organelle-morphology issues and pull requests

#36 - Bump codecov/codecov-action from 4 to 5

Pull Request - State: open - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#35 - Quantify er morphology

Pull Request - State: open - Opened by GwydionJon 7 months ago

#34 - Add blender interface

Pull Request - State: open - Opened by GwydionJon 7 months ago

#33 - MCS on the ER seem way to small

Issue - State: open - Opened by GwydionJon 7 months ago
Labels: bug

#32 - Data analysis

Pull Request - State: closed - Opened by GwydionJon 8 months ago

#31 - Change mcs calculation

Pull Request - State: closed - Opened by GwydionJon 8 months ago

#30 - Work on mcs

Pull Request - State: closed - Opened by GwydionJon 10 months ago

#29 - Add logger to project

Pull Request - State: closed - Opened by GwydionJon 10 months ago

#28 - Add graphs

Pull Request - State: closed - Opened by GwydionJon 12 months ago

#27 - Use codecov action with a token

Pull Request - State: closed - Opened by dokempf about 1 year ago

#26 - Skeleton generation

Pull Request - State: closed - Opened by GwydionJon about 1 year ago - 1 comment

#25 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#24 - Await futures in parallel processing.

Pull Request - State: closed - Opened by dokempf about 1 year ago

#23 - Parallelization + Extended Caching

Pull Request - State: closed - Opened by dokempf about 1 year ago

#23 - Parallelization + Extended Caching

Pull Request - State: closed - Opened by dokempf about 1 year ago

#22 - Implement persistent caching for generated meshes

Pull Request - State: closed - Opened by dokempf about 1 year ago

#22 - Implement persistent caching for generated meshes

Pull Request - State: closed - Opened by dokempf about 1 year ago

#21 - Have demo notebooks showcase the entire available API

Issue - State: open - Opened by dokempf about 1 year ago
Labels: documentation, enhancement

#21 - Have demo notebooks showcase the entire available API

Issue - State: open - Opened by dokempf about 1 year ago
Labels: documentation, enhancement

#20 - Skeleton Calculation

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#19 - Parallelization of organelle mesh construction

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#18 - Sheet/Tubulae quantification for the ER

Issue - State: open - Opened by dokempf about 1 year ago - 1 comment
Labels: enhancement

#18 - Sheet/Tubulae quantification for the ER

Issue - State: open - Opened by dokempf about 1 year ago - 1 comment
Labels: enhancement

#17 - Organelle position quantification

Issue - State: open - Opened by dokempf about 1 year ago
Labels: enhancement

#16 - Membrane contact site quanitifications

Issue - State: open - Opened by dokempf about 1 year ago
Labels: enhancement

#16 - Membrane contact site quanitifications

Issue - State: open - Opened by dokempf about 1 year ago
Labels: enhancement

#15 - Add installation instructions to README.md

Issue - State: open - Opened by dokempf about 1 year ago
Labels: enhancement

#15 - Add installation instructions to README.md

Issue - State: open - Opened by dokempf about 1 year ago
Labels: enhancement

#14 - Add visualization capabilities in the Jupyter Notebook

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#13 - Implement visualization

Pull Request - State: closed - Opened by GwydionJon about 1 year ago

#12 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#12 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#11 - Add persistent (disk-based) caching mechanism for expensive results

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#11 - Add persistent (disk-based) caching mechanism for expensive results

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#10 - Add progress bars to lengthy calculations

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#9 - Avoid synthetic data objects glueing together

Issue - State: open - Opened by dokempf about 1 year ago
Labels: bug

#9 - Avoid synthetic data objects glueing together

Issue - State: open - Opened by dokempf about 1 year ago
Labels: bug

#8 - Implement organell properties

Pull Request - State: closed - Opened by GwydionJon about 1 year ago

#8 - Implement organell properties

Pull Request - State: closed - Opened by GwydionJon about 1 year ago

#7 - Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#7 - Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#6 - implemented clipping

Pull Request - State: closed - Opened by GwydionJon about 1 year ago - 1 comment

#6 - implemented clipping

Pull Request - State: closed - Opened by GwydionJon about 1 year ago - 1 comment

#5 - Clipping

Pull Request - State: closed - Opened by GwydionJon about 1 year ago

#5 - Clipping

Pull Request - State: closed - Opened by GwydionJon about 1 year ago

#4 - Correctly install dependencies in CI

Issue - State: closed - Opened by dokempf about 1 year ago - 1 comment
Labels: bug

#4 - Correctly install dependencies in CI

Issue - State: closed - Opened by dokempf about 1 year ago - 1 comment
Labels: bug

#3 - Implement data set clipping

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#3 - Implement data set clipping

Issue - State: closed - Opened by dokempf about 1 year ago
Labels: enhancement

#2 - Implement core functionality

Pull Request - State: closed - Opened by dokempf about 1 year ago - 1 comment

#2 - Implement core functionality

Pull Request - State: closed - Opened by dokempf about 1 year ago - 1 comment

#1 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#1 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

GitHub / ssciwr/organelle-morphology issues and pull requests