ssciwr/hammingdist issues and pull requests

#137 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago

#136 - Bump pypa/cibuildwheel from 2.20 to 2.21

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#135 - Allow users to access the distances data as a numpy array

Pull Request - State: closed - Opened by lkeegan 6 months ago

#134 - Result to a numpy / panda frame?

Issue - State: closed - Opened by jjkoehorst 6 months ago - 1 comment

#133 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#132 - Bump pypa/cibuildwheel from 2.18 to 2.19

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#131 - Bump pypa/cibuildwheel from 2.17 to 2.18

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#130 - wrong distance results for longer strings?

Issue - State: closed - Opened by lcareypando 8 months ago - 1 comment

#129 - switch from SSC self-hosted macos arm64 runner to macos-14 arm64 github runner

Pull Request - State: closed - Opened by lkeegan 9 months ago

#128 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago

#127 - Bump pypa/cibuildwheel from 2.16 to 2.17

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#126 - Add `dump_sparse()` method to `DataSet`

Pull Request - State: closed - Opened by lkeegan 11 months ago

#125 - Add cmake version to scikit-build config

Pull Request - State: closed - Opened by lkeegan 12 months ago

#124 - Add max_distance

Pull Request - State: closed - Opened by lkeegan 12 months ago

#123 - add CUDA distance implementation

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#122 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#121 - Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#120 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#119 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#118 - re-enable cp38-macosx_arm64 wheel now that cp38 is available on our arm64 macos runner

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#117 - Add optional cutoff distance

Issue - State: closed - Opened by lkeegan about 1 year ago - 2 comments
Labels: enhancement

#116 - Use GCD for multi-threading on macos

Issue - State: open - Opened by lkeegan about 1 year ago
Labels: enhancement

#115 - Bump version to 0.21.0

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#114 - Add NEON simd implementation for arm64 cpus

Pull Request - State: closed - Opened by lkeegan about 1 year ago

#113 - Add arm64 mac CI using locally hosted runner

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#112 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#111 - Add CUDA implementation of distance function for NVIDIA GPUs

Issue - State: closed - Opened by lkeegan over 1 year ago
Labels: enhancement

#110 - Add NEON implementation of distance function for ARM cpus

Issue - State: closed - Opened by lkeegan over 1 year ago
Labels: enhancement, good first issue, iwr-hacktoberfest

#109 - re-enable tests for python 3.12 now that numpy 1.26 is released

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#108 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#107 - use pypi trusted publishing

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#106 - python 3.12 tests disabled until numpy 1.26

Issue - State: closed - Opened by lkeegan over 1 year ago

#105 - Modernize build system

Pull Request - State: closed - Opened by lkeegan over 1 year ago

#104 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#103 - Bump pypa/cibuildwheel from 2.13.0 to 2.14.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#102 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#101 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#100 - Use vMAJOR.MINOR tag for cibuildwheel

Pull Request - State: closed - Opened by dokempf over 1 year ago

#99 - Bump pypa/cibuildwheel from 2.13.0 to 2.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#98 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#97 - Bump pypa/cibuildwheel from 2.12.1 to 2.13.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#96 - Bump pypa/cibuildwheel from 2.12.1 to 2.12.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#95 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#94 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#93 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#92 - Bump pypa/cibuildwheel from 2.12.0 to 2.12.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#91 - modernize build system

Issue - State: closed - Opened by lkeegan almost 2 years ago

#90 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#89 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#88 - Bump pypa/cibuildwheel from 2.11.4 to 2.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#87 - make `OpenMP::OpenMP_CXX` a `PUBLIC` dependency of libhamming

Pull Request - State: closed - Opened by lkeegan about 2 years ago

#86 - OpenMP not working in version 0.18.0

Issue - State: closed - Opened by lkeegan about 2 years ago
Labels: bug

#85 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#84 - Bump pypa/cibuildwheel from 2.11.2 to 2.11.4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#83 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#82 - Bump pypa/cibuildwheel from 2.10.2 to 2.11.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#81 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#80 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#79 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#78 - Bump pypa/cibuildwheel from 2.9.0 to 2.10.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#77 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#76 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#75 - allow runtime choice of uint8 or uint16 for distances matrix element type

Pull Request - State: closed - Opened by lkeegan over 2 years ago

#74 - add fasta_sequence_indices

Pull Request - State: closed - Opened by lkeegan over 2 years ago

#73 - support both uint8 and uint16 datatype for distances matrix

Issue - State: closed - Opened by lkeegan over 2 years ago

#72 - add option to output count of duplicates for each input genome

Issue - State: closed - Opened by lkeegan over 2 years ago

#71 - Bump pypa/cibuildwheel from 2.8.1 to 2.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#70 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#69 - Bump pypa/cibuildwheel from 2.7.0 to 2.8.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#68 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#67 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#66 - Bump pypa/cibuildwheel from 2.6.0 to 2.7.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#65 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#64 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#63 - Bump pypa/cibuildwheel from 2.5.0 to 2.6.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#62 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#61 - Bump pypa/cibuildwheel from 2.4.0 to 2.5.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#60 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#59 - only run one CI job when a release is created

Pull Request - State: closed - Opened by lkeegan almost 3 years ago

#58 - use uint16 type for distance matrix elements

Pull Request - State: closed - Opened by lkeegan almost 3 years ago

#57 - update deps

Pull Request - State: closed - Opened by lkeegan almost 3 years ago

#56 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#55 - bump version

Pull Request - State: closed - Opened by lkeegan almost 3 years ago

#54 - adjustable max distance

Issue - State: closed - Opened by lkeegan almost 3 years ago - 1 comment

#53 - Improves performance of hammingdist

Pull Request - State: closed - Opened by ho-ob almost 3 years ago - 1 comment

#52 - Use https for submodules

Pull Request - State: closed - Opened by dokempf almost 3 years ago

#51 - Bump pypa/cibuildwheel from 2.3.1 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#50 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#49 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 3 years ago

#48 - Bump pypa/cibuildwheel from 2.3.0 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#47 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 3 years ago

#46 - add distance function

Pull Request - State: closed - Opened by lkeegan about 3 years ago

#45 - saturate distances instead of throwing overflow exception

Pull Request - State: closed - Opened by lkeegan about 3 years ago

#44 - feature request: distance between two sequences

Issue - State: closed - Opened by lkeegan about 3 years ago
Labels: enhancement

#43 - feature request: integer overflow behaviour

Issue - State: closed - Opened by lkeegan about 3 years ago
Labels: enhancement

#42 - add function to calculate distances from reference sequence

Pull Request - State: closed - Opened by lkeegan about 3 years ago

#41 - feature request: distance from reference sequence

Issue - State: closed - Opened by lkeegan about 3 years ago
Labels: enhancement

#40 - Bump pypa/cibuildwheel from 2.2.2 to 2.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#39 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 3 years ago

#38 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 3 years ago

GitHub / ssciwr/hammingdist issues and pull requests